RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CHADO15335 359 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 BUD23O43709 281 aaKnown RBP14.34□□□□□ -0.11
USP3-204ENST00000540797 HLA-DPA1P20036 260 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 LHX5Q9H2C1 402 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 ZMYND8Q9ULU4 1186 aaPredicted RBP14.34□□□□□ -0.11
USP3-204ENST00000540797 PEAK1Q9H792 1746 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 DGKAP23743 735 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 CYTH1Q15438 398 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 CRY1Q16526 586 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 BBS7Q8IWZ6 715 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 KIF2BQ8N4N8 673 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 ZCCHC9Q8N567 271 aaKnown RBP14.34□□□□□ -0.11
USP3-204ENST00000540797 NAT16Q8N8M0 369 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 MAGEC3Q8TD91 643 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 PIK3R5Q8WYR1 880 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 MIR1-1HGQ9H1L0 117 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 NEDD8-MDP1E9PL57 170 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 NR5A2O00482 541 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 HNRNPRO43390 633 aaKnown RBP14.34□□□□□ -0.11
USP3-204ENST00000540797 INTS6LQ5JSJ4 861 aaKnown RBP14.34□□□□□ -0.11
USP3-204ENST00000540797 ATAT1Q5SQI0 421 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 LCLAT1Q6UWP7 414 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 DBF4BQ8NFT6 615 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 MYCBPAPQ8TBZ2 947 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 RSPH1Q8WYR4 309 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 CNDP1Q96KN2 507 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 AKAP7Q9P0M2 348 aaPredicted RBP14.34□□□□□ -0.11
USP3-204ENST00000540797 SRRDQ9UH36 339 aa14.34□□□□□ -0.11
USP3-204ENST00000540797 MT-CO1P00395 513 aa14.33□□□□□ -0.11
USP3-204ENST00000540797 ETS1P14921 441 aa14.33□□□□□ -0.11
USP3-204ENST00000540797 SLC25A52Q3SY17 297 aa14.33□□□□□ -0.11
USP3-204ENST00000540797 OR56A4Q8NGH8 313 aa14.33□□□□□ -0.11
USP3-204ENST00000540797 CYGBQ8WWM9 190 aa14.33□□□□□ -0.11
USP3-204ENST00000540797 GMIPQ9P107 970 aa14.33□□□□□ -0.11
USP3-204ENST00000540797 KIAA1522Q9P206 1035 aaPredicted RBP14.33□□□□□ -0.11
USP3-204ENST00000540797 KLRG2A4D1S0 409 aaPredicted RBP14.33□□□□□ -0.12
USP3-204ENST00000540797 E9PBE3 544 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 LIASO43766 372 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 KLHL41O60662 606 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 CILPO75339 1184 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 IL2P60568 153 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 POLNQ7Z5Q5 900 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 MILR1Q7Z6M3 343 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 NALCNQ8IZF0 1738 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 NDEL1Q9GZM8 345 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 AASDHPPTQ9NRN7 309 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 MPP6Q9NZW5 540 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 AGO1Q9UL18 857 aaKnown RBP14.33□□□□□ -0.12
USP3-204ENST00000540797 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.33□□□□□ -0.12
USP3-204ENST00000540797 PAGE1O75459 146 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 C4BPAP04003 597 aaKnown RBP14.33□□□□□ -0.12
USP3-204ENST00000540797 CATP04040 527 aaKnown RBP14.33□□□□□ -0.12
USP3-204ENST00000540797 CENPAP49450 140 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 C1orf127Q8N9H9 656 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 REPS1Q96D71 796 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 EXOC2Q96KP1 924 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 KLC4Q9NSK0 619 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 ARL15Q9NXU5 204 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 TRIM13O60858 407 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 CYLC2Q14093 348 aaPredicted RBP14.33□□□□□ -0.12
USP3-204ENST00000540797 ELMO1Q92556 727 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 B3GNT5Q9BYG0 378 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 ST6GALNAC4Q9H4F1 302 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 MID1IP1Q9NPA3 183 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 RAB23Q9ULC3 237 aa14.33□□□□□ -0.12
USP3-204ENST00000540797 SYN3O14994 580 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 EOMESO95936 686 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 CST3P01034 146 aaPredicted RBP14.32□□□□□ -0.12
USP3-204ENST00000540797 KRT20P35900 424 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 AIF1P55008 147 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 TRIP10Q15642 601 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 CYP2A13Q16696 494 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 TMC3Q7Z5M5 1100 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 C11orf74Q86VG3 221 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 KREMEN1Q96MU8 473 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 FUT8Q9BYC5 575 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 FAM126AQ9BYI3 521 aaPredicted RBP14.32□□□□□ -0.12
USP3-204ENST00000540797 PDE2AO00408 941 aaPredicted RBP14.32□□□□□ -0.12
USP3-204ENST00000540797 UBDO15205 165 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 MSI1O43347 362 aaKnown RBP14.32□□□□□ -0.12
USP3-204ENST00000540797 SKIV2L2P42285 1042 aaKnown RBP14.32□□□□□ -0.12
USP3-204ENST00000540797 IRAK1BP1Q5VVH5 260 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 DET1Q7L5Y6 550 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 MIER2Q8N344 545 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 OR8D1Q8WZ84 308 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 VPS50Q96JG6 964 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 SNX27Q96L92 541 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 BPIFA1Q9NP55 256 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 SH3BP4Q9P0V3 963 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 TBC1D14Q9P2M4 693 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 C1orf232A0A0U1RR37 186 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 ACRP10323 421 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 MAXP61244 160 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 FAAP100Q0VG06 881 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 GPSM1Q86YR5 675 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 CENPLQ8N0S6 344 aaPredicted RBP14.32□□□□□ -0.12
USP3-204ENST00000540797 METTL6Q8TCB7 284 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 MAGED4Q96JG8 741 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 DPY30Q9C005 99 aa14.32□□□□□ -0.12
USP3-204ENST00000540797 L1RE1Q9UN81 338 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms