RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 HTR7P34969 479 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 CD151P48509 253 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 CXCR3P49682 368 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 SLC12A1Q13621 1099 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 VEPH1Q14D04 833 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 DTX3LQ8TDB6 740 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 AGAP11Q8TF27 550 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 SGF29Q96ES7 293 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 TRIM56Q9BRZ2 755 aaKnown RBP10.98□□□□□ -0.65
CLIP1-213ENST00000540338 GLOD4Q9HC38 313 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 ANKRD6Q9Y2G4 727 aa10.98□□□□□ -0.65
CLIP1-213ENST00000540338 RBBP6Q7Z6E9 1792 aaKnown RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 A0A1W2PQH9 124 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 GOLGA8CPA6NN73 597 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 ZNF623O75123 536 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 USP1O94782 785 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 CHRNA1P02708 482 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 ALDH7A1P49419 539 aaKnown RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 NEK3P51956 506 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 KPNA1P52294 538 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 COPAP53621 1224 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 PRKD1Q15139 912 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 DBN1Q16643 649 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 UPP1Q16831 310 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 OTOP3Q7RTS5 596 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 CTU1Q7Z7A3 348 aaKnown RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 CMC1Q7Z7K0 106 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 PDCD6IPQ8WUM4 868 aaKnown RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 HMX1Q9NP08 348 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 CHRAC1Q9NRG0 131 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 HEATR9A2RTY3 570 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 DDHD2O94830 711 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 SLC11A2P49281 568 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 WASHC5Q12768 1159 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 NOGQ13253 232 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 UNC5BQ8IZJ1 945 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 HIPK4Q8NE63 616 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 MFSD3Q96ES6 412 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 TTC1Q99614 292 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 EML4Q9HC35 981 aaKnown RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 ARHGEF3Q9NR81 526 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 MPP6Q9NZW5 540 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 PRKAG3Q9UGI9 489 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 EOMESO95936 686 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 ABCE1P61221 599 aaKnown RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 XKR4Q5GH76 650 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 AGAP9Q5VTM2 703 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 ZNF470Q6ECI4 717 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 TRIM67Q6ZTA4 783 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 SAPCD2Q86UD0 394 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 SH3TC2Q8TF17 1288 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 TRIB2Q92519 343 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 SUSD3Q96L08 255 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 LBHD1Q9BQE6 289 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-213ENST00000540338 ZYG11BQ9C0D3 744 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 OSBPL2Q9H1P3 480 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 PFDN4Q9NQP4 134 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 MTMR10Q9NXD2 777 aa10.97□□□□□ -0.65
CLIP1-213ENST00000540338 UBA6A0AVT1 1052 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-213ENST00000540338 PHGDHO43175 533 aaKnown RBP10.96□□□□□ -0.65
CLIP1-213ENST00000540338 IRAK2O43187 625 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 POLD3Q15054 466 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-213ENST00000540338 POTEHQ6S545 545 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.96□□□□□ -0.65
CLIP1-213ENST00000540338 DDX50Q9BQ39 737 aaKnown RBP10.96□□□□□ -0.65
CLIP1-213ENST00000540338 DHRS4Q9BTZ2 278 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.96□□□□□ -0.65
CLIP1-213ENST00000540338 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-213ENST00000540338 GABRQQ9UN88 632 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 PLIN3O60664 434 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 TRPA1O75762 1119 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 CRABP2P29373 138 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 OR1E1P30953 314 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 MAGEA6P43360 314 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 PRKAA2P54646 552 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 CST9Q5W186 159 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 NEPROQ6NW34 567 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 C10orf107Q8IVU9 208 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 SCUBE1Q8IWY4 988 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 HAPLN3Q96S86 360 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 ARL8BQ9NVJ2 186 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 SORCS3Q9UPU3 1222 aa10.96□□□□□ -0.65
CLIP1-213ENST00000540338 FAM72CH0Y354 149 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 SMIM24O75264 130 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 C2P06681 752 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 PSEN1P49768 467 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 SPRED3Q2MJR0 410 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 PPM1JQ5JR12 505 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 FAM72AQ5TYM5 149 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 FAM72DQ6L9T8 149 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 GPRIN1Q7Z2K8 1008 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 FAM72BQ86X60 149 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 TDRD5Q8NAT2 981 aaKnown RBP10.96□□□□□ -0.66
CLIP1-213ENST00000540338 BLOC1S5Q8TDH9 187 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 CCDC124Q96CT7 223 aaKnown RBP10.96□□□□□ -0.66
CLIP1-213ENST00000540338 RBBP8Q99708 897 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 PAAF1Q9BRP4 392 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 CDYLQ9Y232 598 aa10.96□□□□□ -0.66
CLIP1-213ENST00000540338 C9IYK1 514 aa10.95□□□□□ -0.66
CLIP1-213ENST00000540338 DCLK1O15075 740 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms