RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 LMCD1Q9NZU5 365 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 ZDHHC2Q9UIJ5 367 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 SLC39A10Q9ULF5 831 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 GINS2Q9Y248 185 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 HEMK1Q9Y5R4 338 aaPredicted RBP20.69■□□□□ 0.9
TMEM260-203ENST00000539559 AP1G1O43747 822 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 PIGNO95427 931 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 MCF2P10911 925 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 SERPINB8P50452 374 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 RABGGTBP53611 331 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 CYTH1Q15438 398 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 ARL13AQ5H913 290 aaPredicted RBP20.69■□□□□ 0.9
TMEM260-203ENST00000539559 LDLRAD1Q5T700 205 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 GRTP1Q5TC63 336 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 C18orf25Q96B23 403 aaPredicted RBP20.69■□□□□ 0.9
TMEM260-203ENST00000539559 LENG1Q96BZ8 264 aaPredicted RBP20.69■□□□□ 0.9
TMEM260-203ENST00000539559 ZMAT2Q96NC0 199 aaKnown RBP20.69■□□□□ 0.9
TMEM260-203ENST00000539559 TUBGCP4Q9UGJ1 667 aa20.69■□□□□ 0.9
TMEM260-203ENST00000539559 RGSL1A5PLK6 1076 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 GAS2O43903 313 aaKnown RBP20.68■□□□□ 0.9
TMEM260-203ENST00000539559 THRAP10827 490 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 FGFR3P22607 806 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 LMO2P25791 158 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 RGS2P41220 211 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 NAGLUP54802 743 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 CYLC2Q14093 348 aaPredicted RBP20.68■□□□□ 0.9
TMEM260-203ENST00000539559 KCTD2Q14681 263 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 PIGGQ5H8A4 983 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 ZNF618Q5T7W0 954 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 KBTBD7Q8WVZ9 684 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 KLHL8Q9P2G9 620 aaPredicted RBP20.68■□□□□ 0.9
TMEM260-203ENST00000539559 PTPN1P18031 435 aaKnown RBP20.68■□□□□ 0.9
TMEM260-203ENST00000539559 GRIA4P48058 902 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 LIMK2P53671 638 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 MRPL1Q9BYD6 325 aaKnown RBP20.68■□□□□ 0.9
TMEM260-203ENST00000539559 ILKAPQ9H0C8 392 aaPredicted RBP20.68■□□□□ 0.9
TMEM260-203ENST00000539559 TASP1Q9H6P5 420 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 IARS2Q9NSE4 1012 aaKnown RBP20.68■□□□□ 0.9
TMEM260-203ENST00000539559 FIS1Q9Y3D6 152 aa20.68■□□□□ 0.9
TMEM260-203ENST00000539559 MCM3APO60318 1980 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 H3BSA7 217 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SOCS7O14512 581 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 CSPG5O95196 566 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 C22orf31O95567 290 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 INSRRP14616 1297 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 PRDX6P30041 224 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SPRP35270 261 aaPredicted RBP20.67■□□□□ 0.9
TMEM260-203ENST00000539559 PTPN9P43378 593 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SULT1E1P49888 294 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SCNN1BP51168 640 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 NME3Q13232 169 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 ZNF460Q14592 562 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 B3GNT6Q6ZMB0 384 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 FAM43BQ6ZT52 329 aaPredicted RBP20.67■□□□□ 0.9
TMEM260-203ENST00000539559 DEFB106AQ8N104 65 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SNX31Q8N9S9 440 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 GRIN3AQ8TCU5 1115 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 PPP1R13LQ8WUF5 828 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 CENPIQ92674 756 aaPredicted RBP20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SLC10A4Q96EP9 437 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SUDS3Q9H7L9 328 aaPredicted RBP20.67■□□□□ 0.9
TMEM260-203ENST00000539559 WDR41Q9HAD4 459 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 CHRAC1Q9NRG0 131 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 RHBDL2Q9NX52 303 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 PTTG2Q9NZH5 202 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 KIAA1257Q9ULG3 409 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 MATN2O00339 956 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 ACAT1P24752 427 aaKnown RBP20.67■□□□□ 0.9
TMEM260-203ENST00000539559 DCAF6Q58WW2 860 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SEL1L3Q68CR1 1132 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.67■□□□□ 0.9
TMEM260-203ENST00000539559 RNF139Q8WU17 664 aa20.67■□□□□ 0.9
TMEM260-203ENST00000539559 SENP6Q9GZR1 1112 aaPredicted RBP20.67■□□□□ 0.9
TMEM260-203ENST00000539559 ZCWPW2A0A1B0GU75 182 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 GRID2O43424 1007 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 RNASEH2AO75792 299 aaKnown RBP20.66■□□□□ 0.9
TMEM260-203ENST00000539559 C16orf89Q6UX73 402 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 SCYL1Q96KG9 808 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 SERPINI1Q99574 410 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 ACE2Q9BYF1 805 aaPredicted RBP20.66■□□□□ 0.9
TMEM260-203ENST00000539559 RBM38Q9H0Z9 239 aaKnown RBP20.66■□□□□ 0.9
TMEM260-203ENST00000539559 MROH8Q9H579 483 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 LIN28AQ9H9Z2 209 aaKnown RBP20.66■□□□□ 0.9
TMEM260-203ENST00000539559 VANGL2Q9ULK5 521 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 FZD10Q9ULW2 581 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 TFEBP19484 476 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 SLC26A9Q7LBE3 791 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 PLPPR4Q7Z2D5 763 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 PCDH20Q8N6Y1 951 aaKnown RBP20.66■□□□□ 0.9
TMEM260-203ENST00000539559 ATP6V1E2Q96A05 226 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 ZNF512Q96ME7 567 aaPredicted RBP20.66■□□□□ 0.9
TMEM260-203ENST00000539559 C20orf96Q9NUD7 363 aaPredicted RBP20.66■□□□□ 0.9
TMEM260-203ENST00000539559 CLEC11AQ9Y240 323 aa20.66■□□□□ 0.9
TMEM260-203ENST00000539559 FAM72CH0Y354 149 aa20.65■□□□□ 0.9
TMEM260-203ENST00000539559 HDAC3O15379 428 aa20.65■□□□□ 0.9
TMEM260-203ENST00000539559 SBK3P0C264 359 aa20.65■□□□□ 0.9
TMEM260-203ENST00000539559 GJA5P36382 358 aa20.65■□□□□ 0.9
TMEM260-203ENST00000539559 MAGEA12P43365 314 aa20.65■□□□□ 0.9
TMEM260-203ENST00000539559 TNFAIP2Q03169 654 aa20.65■□□□□ 0.9
TMEM260-203ENST00000539559 GRM3Q14832 879 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms