RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 N4BP2L1Q5TBK1 243 aaPredicted RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 AFMIDQ63HM1 303 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 CDHR3Q6ZTQ4 885 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 STRA8Q7Z7C7 330 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 MTDHQ86UE4 582 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 KCNMB4Q86W47 210 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 SCN4BQ8IWT1 228 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 COLGALT2Q8IYK4 626 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 SLC43A3Q8NBI5 491 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 SLAIN1Q8ND83 568 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 RFWD2Q8NHY2 731 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 SPPL2BQ8TCT7 592 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 RAET1EQ8TD07 263 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 CALML6Q8TD86 181 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 HASPINQ8TF76 798 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 LRRN4Q8WUT4 740 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 STON2Q8WXE9 905 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 DPF3Q92784 378 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 PTPRN2Q92932 1015 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 NSL1Q96IY1 281 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 AGAP3Q96P47 875 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 TMEM175Q9BSA9 504 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 FAM167BQ9BTA0 163 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 KIFC1Q9BW19 673 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 FSD1LQ9BXM9 530 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 CEP41Q9BYV8 373 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 RHOBTB2Q9BYZ6 727 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 UBE2OQ9C0C9 1292 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 TLE6Q9H808 572 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 UGT1A7Q9HAW7 530 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 UGT1A10Q9HAW8 530 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 UGT1A8Q9HAW9 530 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 GLOD4Q9HC38 313 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 ANLNQ9NQW6 1124 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 TLR8Q9NR97 1041 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 SNX15Q9NRS6 342 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 VPS45Q9NRW7 570 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 TRMT13Q9NUP7 481 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 TMLHEQ9NVH6 421 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.76□□□□□ -1.33
USP28-206ENST00000538224 ABI2Q9NYB9 513 aaPredicted RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 CLIC5Q9NZA1 410 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 NOP53Q9NZM5 478 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 PPARGC1AQ9UBK2 798 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 HEY2Q9UBP5 337 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 NEU3Q9UQ49 428 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 HBS1LQ9Y450 684 aaKnown RBP6.76□□□□□ -1.33
USP28-206ENST00000538224 ANKRD36A6QL64 1941 aa6.76□□□□□ -1.33
USP28-206ENST00000538224 ZCWPW2A0A1B0GU75 182 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 A0A1W2PQ45 241 aaPredicted RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 A0A1W2PQH9 124 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 A0A1W2PQY0 241 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 FAM92AA1XBS5 289 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 HMX2A2RU54 273 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 KCNU1A8MYU2 1149 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 F5H423 210 aaPredicted RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 I6L893 689 aaPredicted RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 PARNO95453 639 aaKnown RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 JCHAINP01591 159 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 PROCP04070 461 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 ERVK-10P10266 1014 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 ESRRAP11474 423 aaPredicted RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 ELNP15502 786 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 SELPP16109 830 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 IBSPP21815 317 aaPredicted RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 SERPINB3P29508 390 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 TUBP50607 506 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 RENBPP51606 427 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 TBX4P57082 545 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 RPL10AP62906 217 aaKnown RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 CRADDP78560 199 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 RING1Q06587 406 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 TNK2Q07912 1038 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 TRIM32Q13049 653 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 HNRNPDQ14103 355 aaKnown RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 PDE1CQ14123 709 aaPredicted RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 PCLAFQ15004 111 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 TRIP4Q15650 581 aaPredicted RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 CTC1Q2NKJ3 1217 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 TSNAXIP1Q2TAA8 658 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 DNAL1Q4LDG9 190 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 CTXN3Q4LDR2 81 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 CLLU1OSQ5K130 101 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 VARS2Q5ST30 1063 aaKnown RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 TEDDM1Q5T9Z0 273 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 MBLAC2Q68D91 279 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 KIAA0408Q6ZU52 694 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 LRRC8DQ7L1W4 858 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 SCD5Q86SK9 330 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 LRRTM3Q86VH5 581 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 ARID3BQ8IVW6 561 aaPredicted RBP6.75□□□□□ -1.33
USP28-206ENST00000538224 CNTN4Q8IWV2 1026 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 ARHGAP12Q8IWW6 846 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 LMNTD2Q8IXW0 634 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 KIRREL3Q8IZU9 778 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 UMODL1-AS1Q8N2C9 162 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 DCLK2Q8N568 766 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 ANKLE1Q8NAG6 615 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 SCAMP5Q8TAC9 235 aa6.75□□□□□ -1.33
USP28-206ENST00000538224 PIWIL2Q8TC59 973 aaKnown RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms