RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CCDC74AQ96AQ1 378 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 MRGPRX3Q96LB0 322 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 CBWD1Q9BRT8 395 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 DYRK4Q9NR20 520 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 STIM2Q9P246 746 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 KIF3AQ9Y496 699 aa9.46□□□□□ -0.89
USP28-205ENST00000537706 SPTY2D1-AS1A0A0U1RR47 76 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 VWA3AA6NCI4 1184 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 C9orf172C9J069 976 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 CST3P01034 146 aaPredicted RBP9.46□□□□□ -0.9
USP28-205ENST00000537706 PRKAR1AP10644 381 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 IDEP14735 1019 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 SLC11A2P49281 568 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 CLDN2P57739 230 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 CNTN1Q12860 1018 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 FZD2Q14332 565 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 IL17AQ16552 155 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 ZNF699Q32M78 642 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 CLEC20AQ6ZU45 233 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 STXBP4Q6ZWJ1 553 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 ARL10Q8N8L6 244 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 HJURPQ8NCD3 748 aaPredicted RBP9.46□□□□□ -0.9
USP28-205ENST00000537706 PRR7Q8TB68 274 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 RAD54LQ92698 747 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 SLC45A3Q96JT2 553 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 TBATAQ96M53 351 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 AK8Q96MA6 479 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 C5orf34Q96MH7 638 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 SLC13A1Q9BZW2 595 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 IKZF4Q9H2S9 585 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 SMYD3Q9H7B4 428 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 FZD3Q9NPG1 666 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 FAM49BQ9NUQ9 324 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 STOML2Q9UJZ1 356 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 FARP1Q9Y4F1 1045 aaPredicted RBP9.46□□□□□ -0.9
USP28-205ENST00000537706 KCTD3Q9Y597 815 aa9.46□□□□□ -0.9
USP28-205ENST00000537706 FLNCQ14315 2725 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 HHLA1C9JL84 531 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 JAK2O60674 1132 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 PPP1R37O75864 691 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 NOP2P46087 812 aaKnown RBP9.45□□□□□ -0.9
USP28-205ENST00000537706 ADKP55263 362 aaKnown RBP9.45□□□□□ -0.9
USP28-205ENST00000537706 MYL6P60660 151 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 PTK2BQ14289 1009 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 PITRM1Q5JRX3 1037 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 PHF19Q5T6S3 580 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 AGBL4Q5VU57 503 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 OR6B2Q6IFH4 312 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 GCNT7Q6ZNI0 430 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 UNC93AQ86WB7 457 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 SLC22A18ASQ8N1D0 253 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 CRYBG2Q8N1P7 616 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 CARNMT1Q8N4J0 409 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 TAAR9Q96RI9 348 aa9.45□□□□□ -0.9
USP28-205ENST00000537706 GPN2Q9H9Y4 310 aaPredicted RBP9.45□□□□□ -0.9
USP28-205ENST00000537706 APOBEC3BQ9UH17 382 aaKnown RBP9.45□□□□□ -0.9
USP28-205ENST00000537706 ARHGAP10A1A4S6 786 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 LMO7DNF2Z398 122 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 ALOX15BO15296 676 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 PCDH8O95206 1070 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 ETV5P41161 510 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 YWHAGP61981 247 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP28-205ENST00000537706 SULT2A1Q06520 285 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 CEP135Q66GS9 1140 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 SCARA5Q6ZMJ2 495 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 UNC45BQ8IWX7 931 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 LARP4BQ92615 738 aaKnown RBP9.44□□□□□ -0.9
USP28-205ENST00000537706 ENTPD4Q9Y227 616 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 AGRPO00253 132 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 FPGTO14772 594 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 ITGB7P26010 798 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 LEPRP48357 1165 aaKnown RBP9.44□□□□□ -0.9
USP28-205ENST00000537706 BIRC3Q13489 604 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 PDE1CQ14123 709 aaPredicted RBP9.44□□□□□ -0.9
USP28-205ENST00000537706 EIF2S3LQ2VIR3 472 aaKnown RBP9.44□□□□□ -0.9
USP28-205ENST00000537706 ZNF284Q2VY69 593 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 PRRT3Q5FWE3 981 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 PIK3R6Q5UE93 754 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 ZSCAN30Q86W11 494 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 CCNJLQ8IV13 435 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 FSTL5Q8N475 847 aaPredicted RBP9.44□□□□□ -0.9
USP28-205ENST00000537706 WFDC5Q8TCV5 224 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 PDCD6IPQ8WUM4 868 aaKnown RBP9.44□□□□□ -0.9
USP28-205ENST00000537706 NOX5Q96PH1 765 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 STRA6Q9BX79 667 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 ITGB1BP2Q9UKP3 347 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 SLC5A6Q9Y289 635 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 USP3Q9Y6I4 520 aa9.44□□□□□ -0.9
USP28-205ENST00000537706 HEATR9A2RTY3 570 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 NKX2-8O15522 239 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 ZW10O43264 779 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 RAD1O60671 282 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 LDLRP01130 860 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 ALPIP09923 528 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 TCN2P20062 427 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 PDCP20941 246 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 SLC8A3P57103 927 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 ZFP36L1Q07352 338 aaKnown RBP9.43□□□□□ -0.9
USP28-205ENST00000537706 KCNA1Q09470 495 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 ACCSLQ4AC99 568 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms