RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 PTPRN2Q92932 1015 aa23.26■■□□□ 1.31
SFSWAP-204ENST00000535399 SIPA1Q96FS4 1042 aa23.26■■□□□ 1.31
SFSWAP-204ENST00000535399 CD93Q9NPY3 652 aa23.26■■□□□ 1.31
SFSWAP-204ENST00000535399 CWC15Q9P013 229 aaKnown RBP23.26■■□□□ 1.31
SFSWAP-204ENST00000535399 MBD1Q9UIS9 605 aaPredicted RBP23.26■■□□□ 1.31
SFSWAP-204ENST00000535399 CKAP5Q14008 2032 aa23.26■■□□□ 1.31
SFSWAP-204ENST00000535399 K7ERQ8 282 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 CBX4O00257 560 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 NDUFA10O95299 355 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 SRCP12931 536 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 HCAR3P49019 387 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 MRE11P49959 708 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 ARF5P84085 180 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 BYSLQ13895 437 aaKnown RBP23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 MESDQ14696 234 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 POLD3Q15054 466 aaPredicted RBP23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 SPA17Q15506 151 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 DLG2Q15700 870 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 PLK5Q496M5 336 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 IL31Q6EBC2 164 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 LINGO4Q6UY18 593 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 UMODL1-AS1Q8N2C9 162 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 FAM160A2Q8N612 972 aaPredicted RBP23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 PRCCQ92733 491 aaPredicted RBP23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 ZC3H10Q96K80 434 aaKnown RBP23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 BAG1Q99933 345 aaPredicted RBP23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 USP36Q9P275 1121 aaKnown RBP23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 RAB23Q9ULC3 237 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 OTOGLQ3ZCN5 2332 aa23.25■■□□□ 1.31
SFSWAP-204ENST00000535399 IGHV1OR15-9A0A0B4J2B8 117 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 TMEM110-MUSTN1A8MSY1 372 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 GFRA3O60609 400 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 ZNF217O75362 1048 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 ARHGAP25P42331 645 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 SSR1P43307 286 aaKnown RBP23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 TAS2R40P59535 323 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 RPS14P62263 151 aaKnown RBP23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 DPYSQ14117 519 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 HADHQ16836 314 aaKnown RBP23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 C11orf74Q86VG3 221 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 SPACA7Q96KW9 195 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 FAM129BQ96TA1 746 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 KLC2Q9H0B6 622 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 DUSP15Q9H1R2 295 aaPredicted RBP23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 RSPH9Q9H1X1 276 aaPredicted RBP23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 PCDH18Q9HCL0 1135 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 ITM2CQ9NQX7 267 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 TFR2Q9UP52 801 aa23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 REXO2Q9Y3B8 237 aaKnown RBP23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 RIF1Q5UIP0 2472 aaKnown RBP23.24■■□□□ 1.31
SFSWAP-204ENST00000535399 H3BRJ5 948 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 CD160O95971 181 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 ERCC2P18074 760 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 CLCN6P51797 869 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 YBEYP58557 167 aaPredicted RBP23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 ACCSLQ4AC99 568 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 LAIR1Q6GTX8 287 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 RETSATQ6NUM9 610 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 POLNQ7Z5Q5 900 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 ALYREFQ86V81 257 aaKnown RBP23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 CACUL1Q86Y37 369 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 STK40Q8N2I9 435 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 ATP11CQ8NB49 1132 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 HMCESQ96FZ2 354 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 LRRC19Q9H756 370 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 DONSONQ9NYP3 566 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 CYP8B1Q9UNU6 501 aa23.23■■□□□ 1.31
SFSWAP-204ENST00000535399 EML5Q05BV3 1969 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 CXorf51AA0A1B0GTR3 108 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 RASA4BC9J798 803 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 DAPK3O43293 454 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 RASA4O43374 803 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 SMAD6O43541 496 aaKnown RBP23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 SERPINH1P50454 418 aaKnown RBP23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 ARSEP51690 589 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 SLC20A2Q08357 652 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 PARP15Q460N3 678 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 ATP13A4Q4VNC1 1196 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 ZNF776Q68DI1 518 aaPredicted RBP23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 Q6ZVU0 165 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 FAM71BQ8TC56 605 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 TSC1Q92574 1164 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 CSPG4P5Q96PW8 444 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 ACTL7AQ9Y615 435 aa23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 EP300Q09472 2414 aaPredicted RBP23.22■■□□□ 1.31
SFSWAP-204ENST00000535399 USP34Q70CQ2 3546 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 RCCD1A6NED2 376 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 KDELR3O43731 214 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 IGLV3-19P01714 112 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 ARL4AP40617 200 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 TPMTP51580 245 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 NDST2P52849 883 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 HADHBP55084 474 aaKnown RBP23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 ZBTB16Q05516 673 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 ELAVL3Q14576 367 aaKnown RBP23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 AFMIDQ63HM1 303 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 PMS2CLQ68D20 193 aa23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 LUC7LQ9NQ29 371 aaKnown RBP23.21■■□□□ 1.31
SFSWAP-204ENST00000535399 A0A0A6YYK5 440 aaPredicted RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms