RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 UVRAGQ9P2Y5 699 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 NCDNQ9UBB6 729 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 IP6K2Q9UHH9 426 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 ANAPC7Q9UJX3 599 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 CYP8B1Q9UNU6 501 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 PCDHGA5Q9Y5G8 931 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 SMAD6O43541 496 aaKnown RBP13.28□□□□□ -0.28
VPS28-216ENST00000533806 AKR1B10O60218 316 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 PRPSAP2O60256 369 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 H2AFZP0C0S5 128 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 CD6P30203 668 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 ACVRL1P37023 503 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 NNMTP40261 264 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 PTGER3P43115 390 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 CLCN6P51797 869 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 ARF5P84085 180 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 SLC25A11Q02978 314 aaKnown RBP13.28□□□□□ -0.28
VPS28-216ENST00000533806 SLC20A2Q08357 652 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 TCEAL1Q15170 157 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 DLG2Q15700 870 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 DPYSL2Q16555 572 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 BOLA3Q53S33 107 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 TXNRD3NBQ6F5E7 133 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 SLC36A4Q6YBV0 504 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 H2AFVQ71UI9 128 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 TMEFF1Q8IYR6 380 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 FAM71BQ8TC56 605 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 FAM131CQ96AQ9 280 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 VOPP1Q96AW1 172 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 ZNF419Q96HQ0 510 aaPredicted RBP13.28□□□□□ -0.28
VPS28-216ENST00000533806 PANX2Q96RD6 677 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 KCTD15Q96SI1 283 aaPredicted RBP13.28□□□□□ -0.28
VPS28-216ENST00000533806 DHX35Q9H5Z1 703 aaKnown RBP13.28□□□□□ -0.28
VPS28-216ENST00000533806 DNAI1Q9UI46 699 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 GMEB2Q9UKD1 530 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 PLXND1Q9Y4D7 1925 aa13.28□□□□□ -0.28
VPS28-216ENST00000533806 DOCK4Q8N1I0 1966 aa13.27□□□□□ -0.28
VPS28-216ENST00000533806 ABCA7Q8IZY2 2146 aa13.27□□□□□ -0.28
VPS28-216ENST00000533806 MYO1FO00160 1098 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 CBX4O00257 560 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 MCF2LO15068 1137 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 FGF10O15520 208 aaPredicted RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 CREB3O43889 395 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 MTA2O94776 668 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 PROSCO94903 275 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 OXTRP30559 389 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 ETFBP38117 255 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 YBEYP58557 167 aaPredicted RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 SPEM2Q0P670 501 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 DPYSQ14117 519 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 ELAVL3Q14576 367 aaKnown RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 CST6Q15828 149 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 CSRP2Q16527 193 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 PEAR1Q5VY43 1037 aaPredicted RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 AFMIDQ63HM1 303 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 ZNF776Q68DI1 518 aaPredicted RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 LINGO4Q6UY18 593 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 RFX8Q6ZV50 586 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 LPCAT2Q7L5N7 544 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 CPNE8Q86YQ8 564 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 SLC41A1Q8IVJ1 513 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 STK40Q8N2I9 435 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 GPR161Q8N6U8 529 aaKnown RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 OR2A12Q8NGT7 310 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 ZNF564Q8TBZ8 553 aaPredicted RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 TEKT4Q8WW24 435 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 CTNNBL1Q8WYA6 563 aaPredicted RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 TOE1Q96GM8 510 aaKnown RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 SPON2Q9BUD6 331 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 ARRDC1-AS1Q9H2J1 176 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 PABPC3Q9H361 631 aaKnown RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 DEF6Q9H4E7 631 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 LRRC19Q9H756 370 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 ATP13A1Q9HD20 1204 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 OSGEPQ9NPF4 335 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 SEMA4GQ9NTN9 838 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 CWC15Q9P013 229 aaKnown RBP13.27□□□□□ -0.29
VPS28-216ENST00000533806 SLC25A13Q9UJS0 675 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 INTUQ9ULD6 942 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 PPM1HQ9ULR3 514 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 SCML1Q9UN30 329 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 SDK1Q7Z5N4 2213 aa13.27□□□□□ -0.29
VPS28-216ENST00000533806 ALOX15BO15296 676 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 MAP3K13O43283 966 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 KDELR3O43731 214 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 RAMP2O60895 175 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 DNTTP04053 509 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 ZNF806P0C7X5 589 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 RARAP10276 462 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 ACADMP11310 421 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 GOT1P17174 413 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 IL4RP24394 825 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 CDC25BP30305 580 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 SERPINH1P50454 418 aaKnown RBP13.26□□□□□ -0.29
VPS28-216ENST00000533806 ARSEP51690 589 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 ZNF135P52742 658 aaPredicted RBP13.26□□□□□ -0.29
VPS28-216ENST00000533806 TPI1P60174 286 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 RPL6Q02878 288 aaKnown RBP13.26□□□□□ -0.29
VPS28-216ENST00000533806 SERINC3Q13530 473 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms