RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ADAM22Q9P0K1 906 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 MALT1Q9UDY8 824 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 PADI4Q9UM07 663 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 FAF1Q9UNN5 650 aaPredicted RBP5.66□□□□□ -1.5
CD44-236ENST00000533222 COG5Q9UP83 839 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 INVSQ9Y283 1065 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 ZNF175Q9Y473 711 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 SPEF1Q9Y4P9 236 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 DMRT1Q9Y5R6 373 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 EIF4G3O43432 1585 aaKnown RBP5.66□□□□□ -1.5
CD44-236ENST00000533222 TMEM131LA2VDJ0 1609 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 PNPLA6Q8IY17 1366 aa5.66□□□□□ -1.5
CD44-236ENST00000533222 PPRC1Q5VV67 1664 aaKnown RBP5.66□□□□□ -1.5
CD44-236ENST00000533222 RALGAPBQ86X10 1494 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 MROH2BQ7Z745 1585 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 UBA6A0AVT1 1052 aaPredicted RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 ARHGEF35A5YM69 484 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ACOD1A6NK06 481 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TSPY2A6NKD2 308 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TRPC5OSA6NMA1 111 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 H0Y626 953 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TRIM77I1YAP6 450 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 RNF103O00237 685 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 CACNB4O00305 520 aaPredicted RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 DDX3XO00571 662 aaKnown RBP eCLIP5.65□□□□□ -1.5
CD44-236ENST00000533222 IKBKBO14920 756 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 PRKD3O94806 890 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 CNOT4O95628 575 aaKnown RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 S100A9P06702 114 aaKnown RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 CYP3A4P08684 503 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 IFIT2P09913 472 aaKnown RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 TSPY3P0CV98 308 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TSPY8P0CW00 308 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TPBGLP0DKB5 382 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 CCNB1P14635 433 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ANPEPP15144 967 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 CSF2RAP15509 400 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 KCNA3P22001 575 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 GTF2H1P32780 548 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 RFC4P35249 363 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TM4SF4P48230 202 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 NUP107P57740 925 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TSPY1Q01534 308 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 CDR2Q01850 454 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ALDH6A1Q02252 535 aaKnown RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 GHRHRQ02643 423 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 MVPQ14764 893 aaKnown RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 ME3Q16798 604 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ANO6Q4KMQ2 910 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 XKR3Q5GH77 459 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ATAD3BQ5T9A4 648 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 AGBL2Q5U5Z8 902 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 PRAMEF9Q5VWM5 478 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 PRMT9Q6P2P2 845 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 LRRC8BQ6P9F7 803 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TRMT10BQ6PF06 316 aaKnown RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 PIGWQ7Z7B1 504 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ZER1Q7Z7L7 766 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 NELFCDQ8IXH7 590 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 LRRC56Q8IYG6 542 aaPredicted RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 ARHGAP24Q8N264 748 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 FBXL16Q8N461 479 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 GRK7Q8WTQ7 553 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 SETD7Q8WTS6 366 aaKnown RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 DDI1Q8WTU0 396 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 BORCS5Q969J3 196 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ABTB1Q969K4 478 aaPredicted RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 PDXPQ96GD0 296 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 MSANTD3Q96H12 275 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ZSCAN31Q96LW9 406 aaPredicted RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 C7orf26Q96N11 449 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ZNF578Q96N58 590 aaPredicted RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 VPS35Q96QK1 796 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 MMS19Q96T76 1030 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 SPATA25Q9BR10 227 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 CCSER1Q9C0I3 900 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 NYXQ9GZU5 481 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 CLPBQ9H078 707 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 PLEKHA4Q9H4M7 779 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 DDX4Q9NQI0 724 aaKnown RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 TOPORSQ9NS56 1045 aaPredicted RBP5.65□□□□□ -1.5
CD44-236ENST00000533222 PANK4Q9NVE7 773 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ASNSD1Q9NWL6 643 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 SYBUQ9NX95 663 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ZDHHC7Q9NXF8 308 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 HACD3Q9P035 362 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 ZNF212Q9UDV6 495 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 GNPTGQ9UJJ9 305 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 STX8Q9UNK0 236 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 DMTF1Q9Y222 760 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 AP3M1Q9Y2T2 418 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 PPP2R2CQ9Y2T4 447 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TRPV2Q9Y5S1 764 aa5.65□□□□□ -1.5
CD44-236ENST00000533222 TTC21AQ8NDW8 1320 aa5.65□□□□□ -1.51
CD44-236ENST00000533222 PASKQ96RG2 1323 aa5.65□□□□□ -1.51
CD44-236ENST00000533222 ZNF335Q9H4Z2 1342 aaPredicted RBP5.65□□□□□ -1.51
CD44-236ENST00000533222 RNF17Q9BXT8 1623 aaKnown RBP5.64□□□□□ -1.51
CD44-236ENST00000533222 CYP3A7-CYP3A51PA0A087WV96 503 aa5.64□□□□□ -1.51
CD44-236ENST00000533222 HEATR9A2RTY3 570 aa5.64□□□□□ -1.51
CD44-236ENST00000533222 CTAGE9A4FU28 777 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms