RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	USP25	Q9UHP3	1055 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	SLC25A13	Q9UJS0	675 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	PPM1H	Q9ULR3	514 aa		12.8	□□□□□ -0.36
CAPN1-223	ENST00000533079	LY6G6E	A0A0G2JKS1	128 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079		A0A1W2PQ27	194 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079		A0A1W2PQ64	194 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	GOLGA6L3	A6NEY3	463 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	TCAF2	A6NFQ2	919 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079		A6NNZ2	444 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079		H3BM21	787 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	TERT	O14746	1132 aa	Known RBP	12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	ATP9B	O43861	1147 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	CD19	P15391	556 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	TBXAS1	P24557	533 aa	Predicted RBP	12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	ME1	P48163	572 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	PLK1	P53350	603 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	CNTN1	Q12860	1018 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	CCDC183	Q5T5S1	534 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	KIAA1614	Q5VZ46	1190 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	RBM44	Q6ZP01	1051 aa	Known RBP	12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	BEND5	Q7L4P6	421 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	ABI3BP	Q7Z7G0	1075 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	CHSY1	Q86X52	802 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	CFAP52	Q8N1V2	620 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	UBA3	Q8TBC4	463 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	DQX1	Q8TE96	717 aa	Known RBP	12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	SLC35F5	Q8WV83	523 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	MYEOV	Q96EZ4	313 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	PAGE5	Q96GU1	130 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	BTN2A3P	Q96KV6	586 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	HSFY1	Q96LI6	401 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	CALN1	Q9BXU9	219 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	SERTAD1	Q9UHV2	236 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	SARDH	Q9UL12	918 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	COQ4	Q9Y3A0	265 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079	CSNK1G3	Q9Y6M4	447 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079		U3KQA8	63 aa		12.79	□□□□□ -0.36
CAPN1-223	ENST00000533079		F5H5T6	163 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079		K7ESM1	405 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	MCF2L	O15068	1137 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	RHOBTB3	O94955	611 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ITGB2	P05107	769 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ITGA2B	P08514	1039 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	PAEP	P09466	180 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	SFTPC	P11686	197 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	VAV1	P15498	845 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	METAP1	P53582	386 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	NFATC3	Q12968	1075 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	CLN3	Q13286	438 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ADAM9	Q13443	819 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	EDRF1	Q3B7T1	1238 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ARL13B	Q3SXY8	428 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ZCWPW2	Q504Y3	356 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	PIP5KL1	Q5T9C9	394 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ATG14	Q6ZNE5	492 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ZSCAN30	Q86W11	494 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	LGI2	Q8N0V4	545 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	GUF1	Q8N442	669 aa	Known RBP	12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	OR13H1	Q8NG92	308 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	RNF34	Q969K3	372 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	EEF2KMT	Q96G04	330 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	CCDC114	Q96M63	670 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	CCNL2	Q96S94	520 aa	Predicted RBP	12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	GPR27	Q9NS67	375 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	PCDHA7	Q9UN72	937 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ENTPD2	Q9Y5L3	495 aa		12.78	□□□□□ -0.36
CAPN1-223	ENST00000533079	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079		A0A1W2PQU0	124 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	MOCS2	O96007	188 aa	Predicted RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	EPB41	P11171	864 aa	Known RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	ZNF18	P17022	549 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	TACR2	P21452	398 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	TGM2	P21980	687 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	INHBC	P55103	352 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	TAS2R38	P59533	333 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	MTA1	Q13330	715 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	ZNF177	Q13360	481 aa	Predicted RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	ZNF284	Q2VY69	593 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	POM121L1P	Q3SYA9	428 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	RABGAP1L	Q5R372	815 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	RAP1GAP2	Q684P5	730 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	PMF1	Q6P1K2	205 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	KYAT3	Q6YP21	454 aa	Known RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	ZNF574	Q6ZN55	896 aa	Predicted RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	GCNT7	Q6ZNI0	430 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	PARG	Q86W56	976 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	HORMAD1	Q86X24	394 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	LURAP1L	Q8IV03	231 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	CCAR2	Q8N163	923 aa	Known RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	SLC22A18AS	Q8N1D0	253 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	UBR7	Q8N806	425 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	ZNF548	Q8NEK5	533 aa	Predicted RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	WDR36	Q8NI36	951 aa	Known RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	ATXN7L3B	Q96GX2	97 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	PRR11	Q96HE9	360 aa	Predicted RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	STARD5	Q9NSY2	213 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	DNAJC28	Q9NX36	388 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms