RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CPLX4Q7Z7G2 160 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 CHSY1Q86X52 802 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 AUTS2Q8WXX7 1259 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 BADQ92934 168 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 RPRD1AQ96P16 312 aaPredicted RBP21.12■□□□□ 0.97
VPS28-209ENST00000528142 IL23AQ9NPF7 189 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 AAR2Q9Y312 384 aaKnown RBP21.12■□□□□ 0.97
VPS28-209ENST00000528142 LILRB3O75022 631 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 HLA-DQB2P05538 268 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 CA4P22748 312 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 NPY2RP49146 381 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 SLC18A2Q05940 514 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 SLC1A5Q15758 541 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 ANO4Q32M45 955 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 NAPEPLDQ6IQ20 393 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 TAX1BP1Q86VP1 789 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 GPR65Q8IYL9 337 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 DNAAF3Q8N9W5 541 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 SPATA22Q8NHS9 363 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 MAGEB18Q96M61 343 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 TRPM5Q9NZQ8 1165 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 ACSL4O60488 711 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 KRT37O76014 449 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 POLBP06746 335 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 SNRPAP09012 282 aaKnown RBP21.11■□□□□ 0.97
VPS28-209ENST00000528142 LINC00271P0C7V0 271 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 PPM1AP35813 382 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 HNRNPDQ14103 355 aaKnown RBP21.11■□□□□ 0.97
VPS28-209ENST00000528142 SPANXN3Q5MJ09 141 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 MARK2Q7KZI7 788 aaKnown RBP21.11■□□□□ 0.97
VPS28-209ENST00000528142 TMEM135Q86UB9 458 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 TCEAL8Q8IYN2 117 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 C7orf61Q8IZ16 206 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 FCRL3Q96P31 734 aaPredicted RBP21.11■□□□□ 0.97
VPS28-209ENST00000528142 KLF6Q99612 283 aaPredicted RBP21.11■□□□□ 0.97
VPS28-209ENST00000528142 APOL2Q9BQE5 337 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 SAMD15Q9P1V8 674 aa21.11■□□□□ 0.97
VPS28-209ENST00000528142 HMX2A2RU54 273 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 TRIM49D1C9J1S8 452 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 GOLGA8RI6L899 631 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 J3KR12 359 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 ANXA9O76027 345 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 ZWINTO95229 277 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 DNAJB2P25686 324 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 SLC6A4P31645 630 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 FOXN2P32314 431 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 GBP2P32456 591 aaPredicted RBP21.1■□□□□ 0.97
VPS28-209ENST00000528142 IL9RQ01113 521 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 FAM133BQ5BKY9 247 aaKnown RBP21.1■□□□□ 0.97
VPS28-209ENST00000528142 CERCAMQ5T4B2 595 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 LGSNQ5TDP6 509 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 ZNF449Q6P9G9 518 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 LINC00523Q86TU6 105 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 CIR1Q86X95 450 aaPredicted RBP21.1■□□□□ 0.97
VPS28-209ENST00000528142 MRPL17Q9NRX2 175 aaKnown RBP21.1■□□□□ 0.97
VPS28-209ENST00000528142 MAFFQ9ULX9 164 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 RPS6KL1Q9Y6S9 549 aa21.1■□□□□ 0.97
VPS28-209ENST00000528142 TCP11X1B4DZS4 312 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 AP3B1O00203 1094 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 MT-CYBP00156 380 aaPredicted RBP21.09■□□□□ 0.97
VPS28-209ENST00000528142 VIMP08670 466 aaKnown RBP21.09■□□□□ 0.97
VPS28-209ENST00000528142 MAPKAPK2P49137 400 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 TWF1Q12792 350 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 CDH17Q12864 832 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 PLD1Q13393 1074 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 FRG1Q14331 258 aaKnown RBP21.09■□□□□ 0.97
VPS28-209ENST00000528142 VEPH1Q14D04 833 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 DNAJB7Q7Z6W7 309 aaPredicted RBP21.09■□□□□ 0.97
VPS28-209ENST00000528142 PPP1R2P1Q96PQ5 205 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 NACA2Q9H009 215 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 RXFP1Q9HBX9 757 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 GGA2Q9UJY4 613 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 GRID1Q9ULK0 1009 aa21.09■□□□□ 0.97
VPS28-209ENST00000528142 LAMA2P24043 3122 aaKnown RBP21.09■□□□□ 0.97
VPS28-209ENST00000528142 NYNRINQ9P2P1 1898 aaKnown RBP21.09■□□□□ 0.97
VPS28-209ENST00000528142 MAGEB16A2A368 324 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 F5H5T6 163 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 PRRG1O14668 218 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 TEX28O15482 410 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 OAS1P00973 400 aaKnown RBP21.08■□□□□ 0.97
VPS28-209ENST00000528142 SYN1P17600 705 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 ADRA1AP35348 466 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 PPP3CCP48454 512 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 HARS2P49590 506 aaKnown RBP21.08■□□□□ 0.97
VPS28-209ENST00000528142 SERPINB9P50453 376 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 RENBPP51606 427 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 GEMP55040 296 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 TNK2Q07912 1038 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 NAB1Q13506 487 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 PARP15Q460N3 678 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 CES3Q6UWW8 571 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 PIGWQ7Z7B1 504 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 LGI2Q8N0V4 545 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.08■□□□□ 0.97
VPS28-209ENST00000528142 AZIN2Q96A70 460 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 PLD4Q96BZ4 506 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 MTBPQ96DY7 904 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 SEC16BQ96JE7 1060 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 IL22Q9GZX6 179 aa21.08■□□□□ 0.97
VPS28-209ENST00000528142 RNF38Q9H0F5 515 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms