RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MCEEQ96PE7 176 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 ACE2Q9BYF1 805 aaPredicted RBP10.93□□□□□ -0.66
CD44-227ENST00000528086 KLC2Q9H0B6 622 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 FBRSQ9HAH7 460 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 IL21RQ9HBE5 538 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 FBXL12Q9NXK8 326 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 PPARGC1AQ9UBK2 798 aaKnown RBP10.93□□□□□ -0.66
CD44-227ENST00000528086 OR12D3Q9UGF7 316 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 ADAMTS1Q9UHI8 967 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 VPS28Q9UK41 221 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 PPM1HQ9ULR3 514 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 NENFQ9UMX5 172 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 SLC6A14Q9UN76 642 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 WASF3Q9UPY6 502 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 CHD8Q9HCK8 2581 aa10.93□□□□□ -0.66
CD44-227ENST00000528086 ARHGAP33O14559 1287 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 NDUFS2O75306 463 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 KCNK5O95279 499 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 SEMA4FO95754 770 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 WNT1P04628 370 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 GYPCP04921 128 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 CFIP05156 583 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 CALB1P05937 261 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 RHOCP08134 193 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 ADRB1P08588 477 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 SDHBP21912 280 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 SDC4P31431 198 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 MAPK8P45983 427 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 PSMD8P48556 350 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 PPP2CBP62714 309 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 PPP2CAP67775 309 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 GRIK2Q13002 908 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 MTA1Q13330 715 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 E2F5Q15329 346 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 ASIC2Q16515 512 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 N4BP2L1Q5TBK1 243 aaPredicted RBP10.92□□□□□ -0.66
CD44-227ENST00000528086 DAB2IPQ5VWQ8 1189 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 NCEH1Q6PIU2 408 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 USP30Q70CQ3 517 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 SETD3Q86TU7 594 aaPredicted RBP10.92□□□□□ -0.66
CD44-227ENST00000528086 DRC7Q8IY82 874 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 MSANTD4Q8NCY6 345 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 OR2A12Q8NGT7 310 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 EDEM3Q9BZQ6 932 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 CAAP1Q9H8G2 361 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 TMEM9BQ9NQ34 198 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 SEPT11Q9NVA2 429 aaKnown RBP10.92□□□□□ -0.66
CD44-227ENST00000528086 GPATCH2LQ9NWQ4 482 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 FZD10Q9ULW2 581 aa10.92□□□□□ -0.66
CD44-227ENST00000528086 ACACBO00763 2458 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ILVBLA1L0T0 632 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 TMEM191CA6NGB0 347 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 MCF2LO15068 1137 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ZBTB24O43167 697 aaPredicted RBP10.91□□□□□ -0.66
CD44-227ENST00000528086 RTN2O75298 545 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 MOCS3O95396 460 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 TOP3BO95985 862 aaKnown RBP10.91□□□□□ -0.66
CD44-227ENST00000528086 FTLP02792 175 aaPredicted RBP10.91□□□□□ -0.66
CD44-227ENST00000528086 ACADMP11310 421 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 TCF4P15884 667 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 TNFAIP3P21580 790 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ADPRHP54922 357 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ST8SIA6P61647 398 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 GNA12Q03113 381 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 SULT2A1Q06520 285 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ELAVL3Q14576 367 aaKnown RBP10.91□□□□□ -0.66
CD44-227ENST00000528086 POM121L1PQ3SYA9 428 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 AGBL4Q5VU57 503 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 SFMBT2Q5VUG0 894 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 DNAJC24Q6P3W2 148 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 SND1Q7KZF4 910 aaKnown RBP eCLIP10.91□□□□□ -0.66
CD44-227ENST00000528086 RGL4Q8IZJ4 473 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 HDDC3Q8N4P3 179 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 MINDY1Q8N5J2 469 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 DCAF4L2Q8NA75 395 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 NETO2Q8NC67 525 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 FOXJ1Q92949 421 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ARHGEF2Q92974 986 aaKnown RBP10.91□□□□□ -0.66
CD44-227ENST00000528086 ARRDC3Q96B67 414 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 CAMK1GQ96NX5 476 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 CNPY3Q9BT09 278 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 SELENOOQ9BVL4 669 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ZYG11BQ9C0D3 744 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 BTBD1Q9H0C5 482 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 MUC3BQ9H195 1237 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ISCUQ9H1K1 167 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 PCED1AQ9H1Q7 454 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 TNKS2Q9H2K2 1166 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 SGK2Q9HBY8 427 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 TM9SF3Q9HD45 589 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 DNAAF2Q9NVR5 837 aaKnown RBP10.91□□□□□ -0.66
CD44-227ENST00000528086 TMEM248Q9NWD8 314 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 IFNKQ9P0W0 207 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ARHGAP20Q9P2F6 1191 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 WASF2Q9Y6W5 498 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 WDFY3Q8IZQ1 3526 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 ASPMQ8IZT6 3477 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 MAP1BP46821 2468 aaKnown RBP10.91□□□□□ -0.66
CD44-227ENST00000528086 LRRK1Q38SD2 2015 aa10.91□□□□□ -0.66
CD44-227ENST00000528086 TRPM6Q9BX84 2022 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms