RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 NEXNQ0ZGT2 675 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 SLC18A3Q16572 532 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 SLC9B1Q4ZJI4 515 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 RILPL1Q5EBL4 403 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 CFAP58Q5T655 872 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 SLC29A4Q7RTT9 530 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 TMTC2Q8N394 836 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 PLD5Q8N7P1 536 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 NSUN4Q96CB9 384 aaKnown RBP7.97□□□□□ -1.13
LSM1-202ENST00000520286 ZNF503Q96F45 646 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 HIC2Q96JB3 615 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 FYTTD1Q96QD9 318 aaKnown RBP7.97□□□□□ -1.13
LSM1-202ENST00000520286 MUC13Q9H3R2 512 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 SYNCQ9H7C4 482 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 ABCC2Q92887 1545 aa7.97□□□□□ -1.13
LSM1-202ENST00000520286 TEX13CA0A0J9YWL9 993 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 C16orf96A6NNT2 1141 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 C17orf100A8MU93 164 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 CD72P21854 359 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 NFKBIAP25963 317 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 ACTN2P35609 894 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 CTCFP49711 727 aaPredicted RBP7.96□□□□□ -1.14
LSM1-202ENST00000520286 SLC30A9Q6PML9 568 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 VSTM1Q6UX27 236 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 TTLL10Q6ZVT0 673 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 RRM2BQ7LG56 351 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 MDGA2Q7Z553 956 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 RPAP2Q8IXW5 612 aaPredicted RBP7.96□□□□□ -1.14
LSM1-202ENST00000520286 EXD3Q8N9H8 876 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 DAZAP1Q96EP5 407 aaKnown RBP7.96□□□□□ -1.14
LSM1-202ENST00000520286 CYP4F11Q9HBI6 524 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 ARL15Q9NXU5 204 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 NKIRAS2Q9NYR9 191 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 IL1RAPL1Q9NZN1 696 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 ADD3Q9UEY8 706 aaKnown RBP7.96□□□□□ -1.14
LSM1-202ENST00000520286 SALL3Q9BXA9 1300 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 TNIKQ9UKE5 1360 aa7.96□□□□□ -1.14
LSM1-202ENST00000520286 ENO1P06733 434 aaKnown RBP7.95□□□□□ -1.14
LSM1-202ENST00000520286 CYP2D6P10635 497 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 TYK2P29597 1187 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 ICAM3P32942 547 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 ADRA1BP35368 520 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 KRT20P35900 424 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 EIF3BP55884 814 aaKnown RBP7.95□□□□□ -1.14
LSM1-202ENST00000520286 RPL7AP62424 266 aaKnown RBP7.95□□□□□ -1.14
LSM1-202ENST00000520286 FOXE3Q13461 319 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 LARS2Q15031 903 aaKnown RBP7.95□□□□□ -1.14
LSM1-202ENST00000520286 ZNF667Q5HYK9 610 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 FNDC7Q5VTL7 733 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 Q6YL49 198 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 IKBIPQ70UQ0 350 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 RTL10Q7L3V2 364 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 ULK2Q8IYT8 1036 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 TTC39CQ8N584 583 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 LSMEM1Q8N8F7 131 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 FAM110DQ8TAY7 271 aaPredicted RBP7.95□□□□□ -1.14
LSM1-202ENST00000520286 CELF1Q92879 486 aaKnown RBP7.95□□□□□ -1.14
LSM1-202ENST00000520286 KLHL29Q96CT2 875 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 CCDC17Q96LX7 622 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 KLHL15Q96M94 604 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 PIP5K1AQ99755 562 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 SLC32A1Q9H598 525 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.95□□□□□ -1.14
LSM1-202ENST00000520286 TMEM248Q9NWD8 314 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 PEMTQ9UBM1 199 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 UPB1Q9UBR1 384 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 LYVE1Q9Y5Y7 322 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 DISP3Q9P2K9 1392 aa7.95□□□□□ -1.14
LSM1-202ENST00000520286 EPRSP07814 1512 aaKnown RBP7.94□□□□□ -1.14
LSM1-202ENST00000520286 A0A1W2PQM1 296 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 B4DLN1 442 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 GCATO75600 419 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 RRM1P23921 792 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 CPA2P48052 419 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 TAP1Q03518 808 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 SLC14A1Q13336 389 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 SEMA3AQ14563 771 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 WTAPQ15007 396 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 LSM12Q3MHD2 195 aaKnown RBP7.94□□□□□ -1.14
LSM1-202ENST00000520286 ANXA2RQ3ZCQ2 193 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 FAM153CQ494X1 144 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 TMEM81Q6P7N7 255 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 TRIM72Q6ZMU5 477 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 RASAL3Q86YV0 1011 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 SETD9Q8NE22 299 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 PDLIM2Q96JY6 352 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 ADAD1Q96M93 576 aaKnown RBP7.94□□□□□ -1.14
LSM1-202ENST00000520286 CADM1Q9BY67 442 aaKnown RBP7.94□□□□□ -1.14
LSM1-202ENST00000520286 NUAK2Q9H093 628 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 FOXJ2Q9P0K8 574 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 DTX4Q9Y2E6 619 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 EPN1Q9Y6I3 576 aaPredicted RBP7.94□□□□□ -1.14
LSM1-202ENST00000520286 SPATA31A5Q5VU36 1347 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 SPATA31A6Q5VVP1 1343 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 SPATA31A7Q8IWB4 1347 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 TSPOAP1O95153 1857 aa7.94□□□□□ -1.14
LSM1-202ENST00000520286 COL4A3Q01955 1670 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 PTGES3LE9PB15 166 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 LDLRAD4O15165 306 aa7.93□□□□□ -1.14
LSM1-202ENST00000520286 STRNO43815 780 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms