RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 CARNMT1Q8N4J0 409 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 IL17RCQ8NAC3 791 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 MDGA1Q8NFP4 955 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 RBM41Q96IZ5 413 aaKnown RBP20.69■□□□□ 0.9
USP53-208ENST00000514305 PEBP4Q96S96 227 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 SMOC1Q9H4F8 434 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 ANLNQ9NQW6 1124 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 DNAJC17Q9NVM6 304 aaKnown RBP20.69■□□□□ 0.9
USP53-208ENST00000514305 TRMT1Q9NXH9 659 aaKnown RBP20.69■□□□□ 0.9
USP53-208ENST00000514305 INVSQ9Y283 1065 aa20.69■□□□□ 0.9
USP53-208ENST00000514305 A0A0A0MRY4 1105 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 TBC1D3BA6NDS4 549 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 ZNF487B1APH4 448 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 ZRANB2O95218 330 aaKnown RBP eCLIP20.68■□□□□ 0.9
USP53-208ENST00000514305 ETFBP38117 255 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 MAPKAPK2P49137 400 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 DGKGP49619 791 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 TAS2R40P59535 323 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 RPS24P62847 133 aaKnown RBP20.68■□□□□ 0.9
USP53-208ENST00000514305 STPG1Q5TH74 334 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 PMS2CLQ68D20 193 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 TRMT11Q7Z4G4 463 aaKnown RBP20.68■□□□□ 0.9
USP53-208ENST00000514305 C14orf80Q86SX3 495 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 SETD3Q86TU7 594 aaPredicted RBP20.68■□□□□ 0.9
USP53-208ENST00000514305 SFTPA1Q8IWL2 248 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 REXO1L1PQ8IX06 675 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 RCOR2Q8IZ40 523 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 CCAR2Q8N163 923 aaKnown RBP20.68■□□□□ 0.9
USP53-208ENST00000514305 NAT16Q8N8M0 369 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 LRRC57Q8N9N7 239 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 FIBINQ8TAL6 211 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 WFIKKN2Q8TEU8 576 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 BHMTQ93088 406 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 SPACA7Q96KW9 195 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 ZNF670Q9BS34 389 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 TMPRSS4Q9NRS4 437 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 PLK2Q9NYY3 685 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 BCCIPQ9P287 314 aaKnown RBP eCLIP20.68■□□□□ 0.9
USP53-208ENST00000514305 PCDHA3Q9Y5H8 950 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 MYO18AQ92614 2054 aaKnown RBP20.68■□□□□ 0.9
USP53-208ENST00000514305 ABCA7Q8IZY2 2146 aa20.68■□□□□ 0.9
USP53-208ENST00000514305 BCLAF3A2AJT9 711 aaKnown RBP20.67■□□□□ 0.9
USP53-208ENST00000514305 ANTXRLA6NF34 631 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 SGK1O00141 431 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 TIMM44O43615 452 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 CTNNA2P26232 953 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 HOXD9P28356 352 aaPredicted RBP20.67■□□□□ 0.9
USP53-208ENST00000514305 OR1E1P30953 314 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 CTNNA1P35221 906 aaKnown RBP20.67■□□□□ 0.9
USP53-208ENST00000514305 KIR2DL1P43626 348 aaPredicted RBP20.67■□□□□ 0.9
USP53-208ENST00000514305 RWDD2BP57060 319 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 MESP2Q0VG99 397 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 MMRN1Q13201 1228 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 MANEALQ5VSG8 457 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 DAB2IPQ5VWQ8 1189 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 ZNF783Q6ZMS7 281 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 NT5DC3Q86UY8 548 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 CFAP52Q8N1V2 620 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 LZTR1Q8N653 840 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 IGSF8Q969P0 613 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 PRICKLE1Q96MT3 831 aaPredicted RBP20.67■□□□□ 0.9
USP53-208ENST00000514305 KCTD15Q96SI1 283 aaPredicted RBP20.67■□□□□ 0.9
USP53-208ENST00000514305 CALN1Q9BXU9 219 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 KCND1Q9NSA2 647 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 RXFP3Q9NSD7 469 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 GPATCH2LQ9NWQ4 482 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 FBXO10Q9UK96 956 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 PYCARDQ9ULZ3 195 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 SLC27A6Q9Y2P4 619 aa20.67■□□□□ 0.9
USP53-208ENST00000514305 PLXND1Q9Y4D7 1925 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 A0A0U1RQJ8 604 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 LRRD1A4D1F6 860 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 WASH4PA8MWX3 477 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 I6L893 689 aaPredicted RBP20.66■□□□□ 0.9
USP53-208ENST00000514305 TULP3O75386 442 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 KRT1P04264 644 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 ZFXP17010 805 aaPredicted RBP20.66■□□□□ 0.9
USP53-208ENST00000514305 SERPINB6P35237 376 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 GGCXP38435 758 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 COPS2P61201 443 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 SEMA3BQ13214 749 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 EMC10Q5UCC4 262 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 RNF43Q68DV7 783 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 RFX8Q6ZV50 586 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 CYP4V2Q6ZWL3 525 aaPredicted RBP20.66■□□□□ 0.9
USP53-208ENST00000514305 ETFBKMTQ8IXQ9 262 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 KATNAL2Q8IYT4 538 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 ZNF683Q8IZ20 524 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 PYROXD2Q8N2H3 581 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 PGBD3Q8N328 593 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 PHTF2Q8N3S3 785 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 ZNF513Q8N8E2 541 aaPredicted RBP20.66■□□□□ 0.9
USP53-208ENST00000514305 EXD1Q8NHP7 514 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 FAM71BQ8TC56 605 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 KCNV2Q8TDN2 545 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.66■□□□□ 0.9
USP53-208ENST00000514305 UCMAQ8WVF2 138 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 PCDH18Q9HCL0 1135 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 TMEM248Q9NWD8 314 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 HYOU1Q9Y4L1 999 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms