RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	GOLGA6L19	H0YKK7	550 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	DDX3X	O00571	662 aa	Known RBP eCLIP	13.62	□□□□□ -0.23	2e-8	■■■□□ 17.9
RNF4-215	ENST00000511843	SMAD6	O43541	496 aa	Known RBP	13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	ATP9B	O43861	1147 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	FSBP	O95073	299 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	IL1B	P01584	269 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	C7	P10643	843 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	SRC	P12931	536 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	ACVRL1	P37023	503 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	PBX1	P40424	430 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	DPP6	P42658	865 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	ZNF143	P52747	638 aa	Predicted RBP	13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	UBASH3A	P57075	661 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	GFPT1	Q06210	699 aa	Predicted RBP	13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	ELAVL3	Q14576	367 aa	Known RBP	13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	C6orf118	Q5T5N4	469 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	MANEAL	Q5VSG8	457 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	DCUN1D2	Q6PH85	259 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	LAYN	Q6UX15	382 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	SETD3	Q86TU7	594 aa	Predicted RBP	13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	HDDC3	Q8N4P3	179 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	SH2D3C	Q8N5H7	860 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	MINDY1	Q8N5J2	469 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	ATP11C	Q8NB49	1132 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	CADM4	Q8NFZ8	388 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	CEP76	Q8TAP6	659 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	CPLX3	Q8WVH0	158 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	BIRC7	Q96CA5	298 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	OMD	Q99983	421 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	TRIM7	Q9C029	511 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	TNKS2	Q9H2K2	1166 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	DNAI1	Q9UI46	699 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	SARDH	Q9UL12	918 aa		13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	13.62	□□□□□ -0.23
RNF4-215	ENST00000511843	RNF103	O00237	685 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	CBX4	O00257	560 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	LRIG2	O94898	1065 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	PLEK	P08567	350 aa	Predicted RBP	13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	PTMS	P20962	102 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	ATXN3	P54252	364 aa	Predicted RBP	13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	GALC	P54803	685 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	FOXK2	Q01167	660 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	ARL13B	Q3SXY8	428 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	PSAPL1	Q6NUJ1	521 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	NCEH1	Q6PIU2	408 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	LRSAM1	Q6UWE0	723 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	USP30	Q70CQ3	517 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	DCAF4L2	Q8NA75	395 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	PPP1R9B	Q96SB3	815 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	C2orf49	Q9BVC5	232 aa	Predicted RBP	13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	OSBPL2	Q9H1P3	480 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	GPATCH2L	Q9NWQ4	482 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	PPARGC1A	Q9UBK2	798 aa	Known RBP	13.61	□□□□□ -0.23
RNF4-215	ENST00000511843	NCKAP1	Q9Y2A7	1128 aa		13.61	□□□□□ -0.23
RNF4-215	ENST00000511843		A0A1B0GTW7	788 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	ILVBL	A1L0T0	632 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	ANKRD62	A6NC57	917 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	ARHGAP33	O14559	1287 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	BCAT2	O15382	392 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	RTN2	O75298	545 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	KCNK5	O95279	499 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	ADH1B	P00325	375 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	FTL	P02792	175 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	IGHV4-34	P06331	123 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	GNS	P15586	552 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	DRD3	P35462	400 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	PRKCI	P41743	596 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	CSNK1E	P49674	416 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	KRT83	P78385	493 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	BNC1	Q01954	994 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	GNA12	Q03113	381 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	ZNF252P-AS1	Q0IIN9	211 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	GRIK2	Q13002	908 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	MAMLD1	Q13495	774 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	DAB2IP	Q5VWQ8	1189 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	KIAA0895L	Q68EN5	471 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	C22orf39	Q6P5X5	142 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	LEKR1	Q6ZMV7	388 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	TMC6	Q7Z403	805 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	RABEPK	Q7Z6M1	372 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	SLFN11	Q7Z7L1	901 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	NLRP14	Q86W24	1093 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	CHST14	Q8NCH0	376 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	DEFB124	Q8NES8	71 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	C1orf216	Q8TAB5	229 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	OR8D1	Q8WZ84	308 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	TBC1D31	Q96DN5	1066 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	CNPY3	Q9BT09	278 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	IL21R	Q9HBE5	538 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	SGK2	Q9HBY8	427 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	ATP13A1	Q9HD20	1204 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	MYO1A	Q9UBC5	1043 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	SUSD2	Q9UGT4	822 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	HS3ST2	Q9Y278	367 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843	ANKRD36	A6QL64	1941 aa		13.6	□□□□□ -0.23
RNF4-215	ENST00000511843		A0A1B0GVT2	93 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	CREB3	O43889	395 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	ZMPSTE24	O75844	475 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	CTSL	P07711	333 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms