RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 G6PC2Q9NQR9 355 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 KLQ9UEF7 1012 aa6.18□□□□□ -1.42
SF3B1-212ENST00000496458 SMAD6O43541 496 aaKnown RBP6.17□□□□□ -1.42
SF3B1-212ENST00000496458 HLA-DQA2P01906 255 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 ARRB2P32121 409 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 TNFSF8P32971 234 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 TMPRSS3P57727 454 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 KRT72Q14CN4 511 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 PLK5Q496M5 336 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 VWA5B1Q5TIE3 1220 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 SLC16A12Q6ZSM3 486 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 RASGRP2Q7LDG7 609 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 BHLHA9Q7RTU4 235 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 RPS6KC1Q96S38 1066 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 PAGR1Q9BTK6 254 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 B3GNT4Q9C0J1 378 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 SAYSD1Q9NPB0 183 aa6.17□□□□□ -1.42
SF3B1-212ENST00000496458 KRCC1Q9NPI7 259 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-212ENST00000496458 SPTLC2O15270 562 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 CCNT1O60563 726 aaKnown RBP6.16□□□□□ -1.42
SF3B1-212ENST00000496458 FCGR2AP12318 317 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 CYP4B1P13584 511 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 AVPR2P30518 371 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 CUL4BQ13620 913 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 PRKG1Q13976 671 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 POSTNQ15063 836 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 PDCD2Q16342 344 aaPredicted RBP6.16□□□□□ -1.42
SF3B1-212ENST00000496458 Q6ZTK2 550 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 GALNT7Q86SF2 657 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 KDM1BQ8NB78 822 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 B4GALNT2Q8NHY0 566 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 TRAPPC12Q8WVT3 735 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 OIT3Q8WWZ8 545 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 WDR77Q9BQA1 342 aaPredicted RBP6.16□□□□□ -1.42
SF3B1-212ENST00000496458 HERC2P3Q9BVR0 1158 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 SF3B5Q9BWJ5 86 aaKnown RBP6.16□□□□□ -1.42
SF3B1-212ENST00000496458 HIPK2Q9H2X6 1198 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 RAP2CQ9Y3L5 183 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 SLC4A4Q9Y6R1 1079 aa6.16□□□□□ -1.42
SF3B1-212ENST00000496458 hCG_1642624A0A1W2PR95 340 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 SEPT4O43236 478 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 LDHAP00338 332 aaKnown RBP6.15□□□□□ -1.42
SF3B1-212ENST00000496458 TFRCP02786 760 aaKnown RBP6.15□□□□□ -1.42
SF3B1-212ENST00000496458 CSF1P09603 554 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 HOXA11P31270 313 aaPredicted RBP6.15□□□□□ -1.42
SF3B1-212ENST00000496458 PNPLA4P41247 253 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 RFX2P48378 723 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 RPS6KA3P51812 740 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 BIRC2Q13490 618 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 GPR18Q14330 331 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 RUNDC3AQ59EK9 446 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 CAMK1DQ8IU85 385 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 BRSK2Q8IWQ3 736 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 GALNT15Q8N3T1 639 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 ENGASEQ8NFI3 743 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 GABPB2Q8TAK5 448 aaPredicted RBP6.15□□□□□ -1.42
SF3B1-212ENST00000496458 KTI12Q96EK9 354 aaPredicted RBP6.15□□□□□ -1.42
SF3B1-212ENST00000496458 IFT27Q9BW83 186 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 CADM1Q9BY67 442 aaKnown RBP6.15□□□□□ -1.42
SF3B1-212ENST00000496458 POLDIP3Q9BY77 421 aaKnown RBP6.15□□□□□ -1.42
SF3B1-212ENST00000496458 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.15□□□□□ -1.42
SF3B1-212ENST00000496458 MYLK2Q9H1R3 596 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 RMI1Q9H9A7 625 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 THAP1Q9NVV9 213 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 ZDHHC7Q9NXF8 308 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 NCKIPSDQ9NZQ3 722 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 UPB1Q9UBR1 384 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 RIPOR2Q9Y4F9 1068 aa6.15□□□□□ -1.42
SF3B1-212ENST00000496458 TMEM247A6NEH6 219 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 TMCC1O94876 653 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 CYP1A2P05177 515 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 CHRNB2P17787 502 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 RASSF2P50749 326 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 FBXL14Q8N1E6 418 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 ADAMTS15Q8TE58 950 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 THAP4Q8WY91 577 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 URB1-AS1Q96HZ7 61 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 THOC3Q96J01 351 aaKnown RBP6.14□□□□□ -1.43
SF3B1-212ENST00000496458 FRG2BQ96QU4 278 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 POLR3GLQ9BT43 218 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 PLAC1Q9HBJ0 212 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 PLEKHB1Q9UF11 243 aaPredicted RBP6.14□□□□□ -1.43
SF3B1-212ENST00000496458 COMMD10Q9Y6G5 202 aa6.14□□□□□ -1.43
SF3B1-212ENST00000496458 A0A0A0MQY5 61 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 LACTBL1A8MY62 500 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 UNGP13051 313 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-212ENST00000496458 CPA1P15085 419 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 ARSAP15289 507 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 PRKCHP24723 683 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 ADD2P35612 726 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 AARSP49588 968 aaKnown RBP eCLIP6.13□□□□□ -1.43
SF3B1-212ENST00000496458 MCM2P49736 904 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 ENTPD1P49961 510 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 SELENOVP59797 346 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 ERV3-1Q14264 604 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 ZNF484Q5JVG2 852 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 FAM83BQ5T0W9 1011 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 RUSC1-AS1Q66K80 236 aa6.13□□□□□ -1.43
SF3B1-212ENST00000496458 MEPCEQ7L2J0 689 aaKnown RBP6.13□□□□□ -1.43
SF3B1-212ENST00000496458 HORMAD2Q8N7B1 307 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms