RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	CNTNAP2	Q9UHC6	1331 aa		4.63	□□□□□ -1.67
VPS52-222	ENST00000495981	KIAA1549L	Q6ZVL6	1849 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	ITPR3	Q14573	2671 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	TICRR	Q7Z2Z1	1910 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	DOCK6	Q96HP0	2047 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	CCDC196	A0A1B0GTZ2	297 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	C4orf47	A7E2U8	309 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	NUDT19	A8MXV4	375 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	NPC1	O15118	1278 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	TEX28	O15482	410 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	PRNP	P04156	253 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	FURIN	P09958	794 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	SPATA31D3	P0C874	917 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	DHRS4L1	P0CG22	281 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	EEF1G	P26641	437 aa	Known RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	GNA11	P29992	359 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	ADSL	P30566	484 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	CA8	P35219	290 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	GDNF	P39905	211 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	MLH1	P40692	756 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	ALDH9A1	P49189	494 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	ALDH7A1	P49419	539 aa	Known RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	NPEPPS	P55786	919 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	NRG3	P56975	720 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	NTHL1	P78549	312 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	MEF2A	Q02078	507 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	MBTD1	Q05BQ5	628 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	CAPS	Q13938	189 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	GIT2	Q14161	759 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	STARD3	Q14849	445 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	EMC2	Q15006	297 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	POSTN	Q15063	836 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	PFKFB4	Q16877	469 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	ARL13B	Q3SXY8	428 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	ZACN	Q401N2	412 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	PLEKHN1	Q494U1	663 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	EARS2	Q5JPH6	523 aa	Known RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	JMJD6	Q6NYC1	403 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	PGBD2	Q6P3X8	592 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	SPATA31D4	Q6ZUB0	917 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	MIER3	Q7Z3K6	550 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	MRPL10	Q7Z7H8	261 aa	Known RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	RHPN2	Q8IUC4	686 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	COLGALT2	Q8IYK4	626 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	BICD2	Q8TD16	824 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	SNX33	Q8WV41	574 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	HAS1	Q92839	578 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	BORCS6	Q96GS4	357 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	DYDC2	Q96IM9	177 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	TMX3	Q96JJ7	454 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	UBXN10	Q96LJ8	280 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	PPM1M	Q96MI6	270 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	LXN	Q9BS40	222 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	TMEM175	Q9BSA9	504 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	EIF2A	Q9BY44	585 aa	Known RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	TRIM54	Q9BYV2	358 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	GCOM2	Q9BZD3	368 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	PLA2G2F	Q9BZM2	168 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	INO80B	Q9C086	356 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	NXF3	Q9H4D5	531 aa	Known RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	SMURF2	Q9HAU4	748 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	SH3GLB2	Q9NR46	395 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	POLR3B	Q9NW08	1133 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	BCCIP	Q9P287	314 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	KLHL14	Q9P2G3	628 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	SUCLA2	Q9P2R7	463 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	CACNG4	Q9UBN1	327 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	TRPS1	Q9UHF7	1281 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	DDX25	Q9UHL0	483 aa	Known RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	DNAI1	Q9UI46	699 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	FBXW11	Q9UKB1	542 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	HES2	Q9Y543	173 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	RAI2	Q9Y5P3	530 aa		4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	NUP210	Q8TEM1	1887 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS52-222	ENST00000495981	ATM	Q13315	3056 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	CCDC195	A0A1B0GUA6	201 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	ARL5C	A6NH57	179 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	LGALS16	A8MUM7	142 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981		J3KRW8	73 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	ACKR2	O00590	384 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	NRP1	O14786	923 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	ARHGAP6	O43182	974 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	B4GALT5	O43286	388 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	ENDOD1	O94919	500 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	CNOT4	O95628	575 aa	Known RBP	4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	GLUD1	P00367	558 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	POMC	P01189	267 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	AHSG	P02765	367 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	EDN1	P05305	212 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	UROD	P06132	367 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	C8B	P07358	591 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	LTA4H	P09960	611 aa	Known RBP	4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	ZNF806	P0C7X5	589 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	GAA	P10253	952 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	HNRNPL	P14866	589 aa	Known RBP eCLIP	4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	XPA	P23025	273 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	PCSK1	P29120	753 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	ARL4A	P40617	200 aa		4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	RPS9	P46781	194 aa	Known RBP	4.61	□□□□□ -1.67
VPS52-222	ENST00000495981	MAPKAPK2	P49137	400 aa		4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms