RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 RAB3IL1Q8TBN0 382 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 C7orf26Q96N11 449 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 ARHGEF3Q9NR81 526 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 CHRAC1Q9NRG0 131 aa21.52■■□□□ 1.03
CCDC88B-208ENST00000492980 FNDC1Q4ZHG4 1894 aaPredicted RBP21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 CCDC195A0A1B0GUA6 201 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 MGRN1O60291 552 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 SOAT2O75908 522 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 DLDP09622 509 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 SLC2A3P11169 496 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 TMPRSS15P98073 1019 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 PDE1BQ01064 536 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 TCTN1Q2MV58 587 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 SPDYAQ5MJ70 313 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 TEDDM1Q5T9Z0 273 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 PARP9Q8IXQ6 854 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 ZNF683Q8IZ20 524 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 KIF2BQ8N4N8 673 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 RBBP8Q99708 897 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 NUMBLQ9Y6R0 609 aa21.51■■□□□ 1.03
CCDC88B-208ENST00000492980 MT-CYBP00156 380 aaPredicted RBP21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 GSRP00390 522 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 ARFIP2P53365 341 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 ARPP19P56211 112 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 N4BP2L1Q5TBK1 243 aaPredicted RBP21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 C16orf46Q6P387 395 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 STRA8Q7Z7C7 330 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 ISL2Q96A47 359 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 AGAP2Q99490 1192 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 TMEM120AQ9BXJ8 343 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 ATP5HO75947 161 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 ALDH2P05091 517 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 HLA-DQB2P05538 268 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 DNAJB2P25686 324 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 YWHAQP27348 245 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 MAGEA12P43365 314 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 PAPOLAP51003 745 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 OCRLQ01968 901 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 EFEMP1Q12805 493 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 HSP90AA5PQ58FG0 334 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 TIGD7Q6NT04 549 aaPredicted RBP21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 RSPO2Q6UXX9 243 aaPredicted RBP21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 MTDHQ86UE4 582 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 FBXO32Q969P5 355 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 TBL1YQ9BQ87 522 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 NOL6Q9H6R4 1146 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 FNIP2Q9P278 1114 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 DCDC2Q9UHG0 476 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 ZFP69BQ9UJL9 534 aa21.5■■□□□ 1.03
CCDC88B-208ENST00000492980 MTMR11A4FU01 709 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 ANXA9O76027 345 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 VNN2O95498 520 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 CPB1P15086 417 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 NMBRP28336 390 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 LIMK2P53671 638 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 DBN1Q16643 649 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 TAF1BQ53T94 588 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 MS4A13Q5J8X5 152 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 FUT10Q6P4F1 479 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 KCNMB4Q86W47 210 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 SEPT8Q92599 483 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 ATP2A3Q93084 1043 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 KIFC1Q9BW19 673 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 CRISPLD1Q9H336 500 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 PRDM5Q9NQX1 630 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 CLIC5Q9NZA1 410 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 LRFN2Q9ULH4 789 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 SLC27A5Q9Y2P5 690 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 MTO1Q9Y2Z2 717 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 GREB1Q4ZG55 1949 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 DOCK4Q8N1I0 1966 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 T-ENOLP0DO92 83 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 TARSP26639 723 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 SPRP35270 261 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 IRX4P78413 519 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 PPM1JQ5JR12 505 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 CLNKQ7Z7G1 428 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 LRRC49Q8IUZ0 686 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 DCLK2Q8N568 766 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 IPMKQ8NFU5 416 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 AZIN2Q96A70 460 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 SNX15Q9NRS6 342 aa21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 C20orf96Q9NUD7 363 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.49■■□□□ 1.03
CCDC88B-208ENST00000492980 TET1Q8NFU7 2136 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 TBC1D4O60343 1298 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 PLIN3O60664 434 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 SNNO75324 88 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 RTN3O95197 1032 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 TBX18O95935 607 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 PRKCGP05129 697 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 F7P08709 466 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 TYK2P29597 1187 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 GPR17Q13304 367 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 RTP2Q5QGT7 225 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 CRIPAKQ8N1N5 446 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 RBM22Q9NW64 420 aaKnown RBP eCLIP21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 HEY2Q9UBP5 337 aa21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 IPO11Q9UI26 975 aaKnown RBP21.48■■□□□ 1.03
CCDC88B-208ENST00000492980 MYLKQ15746 1914 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms