RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 C2orf49Q9BVC5 232 aaPredicted RBP25.3■■□□□ 1.64
UPF3A-209ENST00000492270 BTBD1Q9H0C5 482 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 TMEM9BQ9NQ34 198 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 NDFIP2Q9NV92 336 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 FBXL12Q9NXK8 326 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 SLC6A14Q9UN76 642 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 DOCK9Q9BZ29 2069 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 K7ERQ8 282 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 TM4SF5O14894 197 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 LRIG2O94898 1065 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 SEMA4FO95754 770 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 PLEKP08567 350 aaPredicted RBP25.29■■□□□ 1.64
UPF3A-209ENST00000492270 SERPINF2P08697 491 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 SLC8A1P32418 973 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 MAPK8P45983 427 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 METAP1P53582 386 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 KRT83P78385 493 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 ELAVL3Q14576 367 aaKnown RBP25.29■■□□□ 1.64
UPF3A-209ENST00000492270 PLEKHA7Q6IQ23 1121 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 RWDD4Q6NW29 188 aaKnown RBP25.29■■□□□ 1.64
UPF3A-209ENST00000492270 PPP1R2P3Q6NXS1 205 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 SLFN11Q7Z7L1 901 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 ZCCHC9Q8N567 271 aaKnown RBP25.29■■□□□ 1.64
UPF3A-209ENST00000492270 AADATQ8N5Z0 425 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 DCAF4L2Q8NA75 395 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 DNASE2BQ8WZ79 361 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 SNX19Q92543 992 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 CNPY3Q9BT09 278 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 XPO4Q9C0E2 1151 aaKnown RBP25.29■■□□□ 1.64
UPF3A-209ENST00000492270 MIR1-1HGQ9H1L0 117 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 EIF2B4Q9UI10 523 aaKnown RBP25.29■■□□□ 1.64
UPF3A-209ENST00000492270 SCML1Q9UN30 329 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 HS3ST2Q9Y278 367 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 SLCO1B1Q9Y6L6 691 aa25.29■■□□□ 1.64
UPF3A-209ENST00000492270 ILVBLA1L0T0 632 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 RNASEH2AO75792 299 aaKnown RBP25.28■■□□□ 1.64
UPF3A-209ENST00000492270 IL1BP01584 269 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 FTLP02792 175 aaPredicted RBP25.28■■□□□ 1.64
UPF3A-209ENST00000492270 GZMAP12544 262 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 SCAPQ12770 1279 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 TDRD12Q587J7 1177 aaKnown RBP25.28■■□□□ 1.64
UPF3A-209ENST00000492270 USP30Q70CQ3 517 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 NLRP14Q86W24 1093 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 SPON2Q9BUD6 331 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 TRIM7Q9C029 511 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 NCKAP1Q9Y2A7 1128 aa25.28■■□□□ 1.64
UPF3A-209ENST00000492270 CNOT1A5YKK6 2376 aaKnown RBP25.28■■□□□ 1.64
UPF3A-209ENST00000492270 SMAD6O43541 496 aaKnown RBP25.27■■□□□ 1.64
UPF3A-209ENST00000492270 BNIP3LO60238 219 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 GYPCP04921 128 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 GNA12Q03113 381 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 GFPT1Q06210 699 aaPredicted RBP25.27■■□□□ 1.64
UPF3A-209ENST00000492270 ZNF252P-AS1Q0IIN9 211 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 TMC6Q7Z403 805 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 RABEPKQ7Z6M1 372 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 ATP11CQ8NB49 1132 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 OR2I1PQ8NGU4 316 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 ZNF653Q96CK0 615 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 TBC1D31Q96DN5 1066 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 OMDQ99983 421 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 GTPBP2Q9BX10 602 aaKnown RBP25.27■■□□□ 1.64
UPF3A-209ENST00000492270 NEUROG2Q9H2A3 272 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 TSPY26PQ9H489 355 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 SGK2Q9HBY8 427 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 PARVAQ9NVD7 372 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 CNOT8Q9UFF9 292 aaKnown RBP25.27■■□□□ 1.64
UPF3A-209ENST00000492270 SUSD2Q9UGT4 822 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 DNAI1Q9UI46 699 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 SARDHQ9UL12 918 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 FZD10Q9ULW2 581 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 CAPN11Q9UMQ6 739 aa25.27■■□□□ 1.64
UPF3A-209ENST00000492270 ZBTB32Q9Y2Y4 487 aaPredicted RBP25.27■■□□□ 1.64
UPF3A-209ENST00000492270 CBX4O00257 560 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 PLK4O00444 970 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 RTN2O75298 545 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 ADH1BP00325 375 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 RHOQP17081 205 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 KCNA4P22459 653 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 ACVRL1P37023 503 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 ZBED6P86452 979 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 UAP1L1Q3KQV9 507 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 PPM1JQ5JR12 505 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 LRSAM1Q6UWE0 723 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 ZNF783Q6ZMS7 281 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 OR8D1Q8WZ84 308 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 BIRC7Q96CA5 298 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 PCED1AQ9H1Q7 454 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 ATP13A1Q9HD20 1204 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 TMEM248Q9NWD8 314 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 ACTL7AQ9Y615 435 aa25.26■■□□□ 1.63
UPF3A-209ENST00000492270 FAM47DPA6NHR8 397 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 ZMPSTE24O75844 475 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 FSBPO95073 299 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 GNSP15586 552 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 PSMA2P25787 234 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 DRD3P35462 400 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 POM121L1PQ3SYA9 428 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 EFHC2Q5JST6 749 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 HDDC3Q8N4P3 179 aa25.25■■□□□ 1.63
UPF3A-209ENST00000492270 C1orf216Q8TAB5 229 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms