RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ABCG1P45844 678 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 RXRGP48443 463 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 RAB14P61106 215 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 VSIG10LQ86VR7 867 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 AKT1S1Q96B36 256 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 LNPEPQ9UIQ6 1025 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 ANAPC2Q9UJX6 822 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 ADAM30Q9UKF2 790 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 FAM220BPB1ANY3 271 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 ALOX15BO15296 676 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 TGFB1I1O43294 461 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 SERPINA6P08185 405 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 CAMK1DQ8IU85 385 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 ALG3Q92685 438 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 MYOM1P52179 1685 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 FGFR3P22607 806 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 FUT2Q10981 343 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 SQLEQ14534 574 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 GRIK5Q16478 980 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 UNC5AQ6ZN44 842 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 TRABD2AQ86V40 505 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 SLC41A1Q8IVJ1 513 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 HSD17B14Q9BPX1 270 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 NFASCO94856 1347 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 RGS14O43566 566 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 FMO4P31512 558 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 FLT3P36888 993 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 NAGLUP54802 743 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 TAS2R40P59535 323 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 DGUOKQ16854 277 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 MAGEB10Q96LZ2 347 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-210ENST00000487017 FHDC1Q9C0D6 1143 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-210ENST00000487017 RNPEPQ9H4A4 650 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 CYLDQ9NQC7 956 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 SPACA6W5XKT8 324 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 WTIPA6NIX2 430 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-210ENST00000487017 LBPP18428 481 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 UBA1P22314 1058 aaKnown RBP16.69■□□□□ 0.26
COL7A1-210ENST00000487017 ELAVL2Q12926 359 aaKnown RBP16.69■□□□□ 0.26
COL7A1-210ENST00000487017 RETSATQ6NUM9 610 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 TRPC4APQ8TEL6 797 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 RIBC2Q9H4K1 309 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 SH3BP4Q9P0V3 963 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 TNFSF13BQ9Y275 285 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 CRYL1Q9Y2S2 319 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 QPCTQ16769 361 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 FKBP1CQ5VVH2 108 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 TMEM86AQ8N2M4 240 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 ANKRD49Q8WVL7 239 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 ZNF670Q9BS34 389 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 SLCO1B3Q9NPD5 702 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 ZNF112Q9UJU3 913 aa16.69■□□□□ 0.26
COL7A1-210ENST00000487017 TTLL13PA6NNM8 815 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 UBAP2LQ14157 1087 aaKnown RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 TSHZ1Q6ZSZ6 1077 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 C19orf18Q8NEA5 215 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 C6orf62Q9GZU0 229 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ZMYM5Q9UJ78 669 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 CLUHO75153 1309 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 DDX3YO15523 660 aaKnown RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 EDF1O60869 148 aaKnown RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 NFICP08651 508 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 GSTT1P30711 240 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 EPHB3P54753 998 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ADARP55265 1226 aaKnown RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 PURAQ00577 322 aaKnown RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 MFSD10Q14728 455 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 PDK3Q15120 406 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 DNAJC14Q6Y2X3 702 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 EBNA1BP2Q99848 306 aaKnown RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ADPRHL2Q9NX46 363 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 KANSL3Q9P2N6 904 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ENOPH1Q9UHY7 261 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 FGF10O15520 208 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 MED26O95402 600 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 FGRP09769 529 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ATP6V1C1P21283 382 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 HK2P52789 917 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 RPL7AP62424 266 aaKnown RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ARMC4Q5T2S8 1044 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 PALB2Q86YC2 1186 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 MARK4Q96L34 752 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ALG9Q9H6U8 611 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 CATSPERZQ9NTU4 200 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-210ENST00000487017 OR12D3Q9UGF7 316 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 RGSL1A5PLK6 1076 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 WFS1O76024 890 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 YWHAQP27348 245 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 GRK3P35626 688 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 GRIA4P48058 902 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ZACNQ401N2 412 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 IL27RAQ6UWB1 636 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 HEATR4Q86WZ0 1026 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 CYP4Z2PQ8N1L4 340 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 FBXW8Q8N3Y1 598 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 ZNF276Q8N554 614 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 PHACTR1Q9C0D0 580 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 AP3M1Q9Y2T2 418 aa16.68■□□□□ 0.26
COL7A1-210ENST00000487017 CD3EAPO15446 510 aaKnown RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms