RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 ICA1Q05084 483 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 GPR18Q14330 331 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 DUSP6Q16828 381 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 INO80DQ53TQ3 878 aaPredicted RBP4.27□□□□□ -1.73
VPS41-213ENST00000485955 DCAF12L2Q5VW00 463 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 TMEM71Q6P5X7 295 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 IGFN1Q86VF2 1251 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 IQCF1Q8N6M8 205 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 LRRC57Q8N9N7 239 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 POF1BQ8WVV4 589 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 CPT1BQ92523 772 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 TRAPPC9Q96Q05 1148 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 PIGSQ96S52 555 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 DDX23Q9BUQ8 820 aaKnown RBP4.27□□□□□ -1.73
VPS41-213ENST00000485955 SF3B5Q9BWJ5 86 aaKnown RBP4.27□□□□□ -1.73
VPS41-213ENST00000485955 PLCB1Q9NQ66 1216 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 RNF146Q9NTX7 359 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 ZDHHC7Q9NXF8 308 aa4.27□□□□□ -1.73
VPS41-213ENST00000485955 CSTBP04080 98 aaKnown RBP4.26□□□□□ -1.73
VPS41-213ENST00000485955 FCGR2AP12318 317 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 ARSBP15848 533 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 CHRNB2P17787 502 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 CYP2J2P51589 502 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 ROR2Q01974 943 aaKnown RBP4.26□□□□□ -1.73
VPS41-213ENST00000485955 LTBQ06643 244 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 Q0VFX4 171 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 GPS2Q13227 327 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 PDCLQ13371 301 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 ALKBH1Q13686 389 aaKnown RBP4.26□□□□□ -1.73
VPS41-213ENST00000485955 SLC4A8Q2Y0W8 1093 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 FAM171A1Q5VUB5 890 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 DGAT2L7PQ6IED9 249 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 SYNE3Q6ZMZ3 975 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.26□□□□□ -1.73
VPS41-213ENST00000485955 SCN4BQ8IWT1 228 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 CACNA2D3Q8IZS8 1091 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 VPS37AQ8NEZ2 397 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 HERC2P3Q9BVR0 1158 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 CLPBQ9H078 707 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 ACTR5Q9H9F9 607 aaPredicted RBP4.26□□□□□ -1.73
VPS41-213ENST00000485955 KRCC1Q9NPI7 259 aaPredicted RBP4.26□□□□□ -1.73
VPS41-213ENST00000485955 PLK2Q9NYY3 685 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 NDUFAF4Q9P032 175 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 GRHPRQ9UBQ7 328 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 KLQ9UEF7 1012 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 TAGLN3Q9UI15 199 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 SLC25A13Q9UJS0 675 aa4.26□□□□□ -1.73
VPS41-213ENST00000485955 A0A0A0MQY5 61 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 F5H423 210 aaPredicted RBP4.25□□□□□ -1.73
VPS41-213ENST00000485955 STMND1H3BQB6 276 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 ACAA1P09110 424 aaPredicted RBP4.25□□□□□ -1.73
VPS41-213ENST00000485955 ACP5P13686 325 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 OAZ1P54368 228 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 HDAC1Q13547 482 aaPredicted RBP4.25□□□□□ -1.73
VPS41-213ENST00000485955 TUBB8Q3ZCM7 444 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 C5orf22Q49AR2 442 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 TANGO2Q6ICL3 276 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 Q6ZSV7 163 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 SYT13Q7L8C5 426 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 ZNF367Q7RTV3 350 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 CAMK1DQ8IU85 385 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 SPATA2LQ8IUW3 424 aaPredicted RBP4.25□□□□□ -1.73
VPS41-213ENST00000485955 SPICE1Q8N0Z3 855 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 PTGR2Q8N8N7 351 aaPredicted RBP4.25□□□□□ -1.73
VPS41-213ENST00000485955 CSGALNACT1Q8TDX6 532 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 CTAGE1Q96RT6 745 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 SLCO5A1Q9H2Y9 848 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 ACAD9Q9H845 621 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 PLEKHA2Q9HB19 425 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 HIF1ANQ9NWT6 349 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 NCKIPSDQ9NZQ3 722 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 BAG5Q9UL15 447 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 PROCRQ9UNN8 238 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 RAP2CQ9Y3L5 183 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 SLC4A4Q9Y6R1 1079 aa4.25□□□□□ -1.73
VPS41-213ENST00000485955 DOCK7Q96N67 2140 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 MST1RQ04912 1400 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 CCDC194A0A1B0GVG4 234 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 CLEC18AA5D8T8 446 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 HMX3A6NHT5 357 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 OR6C75A6NL08 312 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 E7EVH7 732 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 H0Y3Z8 333 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 IPO5O00410 1097 aaKnown RBP4.24□□□□□ -1.73
VPS41-213ENST00000485955 SPRY3O43610 288 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 HLA-DQA2P01906 255 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 UNGP13051 313 aaPredicted RBP4.24□□□□□ -1.73
VPS41-213ENST00000485955 GSTM2P28161 218 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 PPP3CCP48454 512 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 PCYT1AP49585 367 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 PRKAA2P54646 552 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 TRIM14Q14142 442 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 SYTL3Q4VX76 610 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 CCDC38Q502W7 563 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 FNBP1LQ5T0N5 605 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 JMJD6Q6NYC1 403 aaPredicted RBP4.24□□□□□ -1.73
VPS41-213ENST00000485955 TRIM74Q86UV6 250 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 TRIM73Q86UV7 250 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 ADHFE1Q8IWW8 467 aa4.24□□□□□ -1.73
VPS41-213ENST00000485955 FAM185AQ8N0U4 392 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms