RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 ZMIZ1Q9ULJ6 1067 aa12.46□□□□□ -0.41
SQSTM1-207ENST00000481335 PPM1HQ9ULR3 514 aa12.46□□□□□ -0.41
SQSTM1-207ENST00000481335 SLCO1B1Q9Y6L6 691 aa12.46□□□□□ -0.41
SQSTM1-207ENST00000481335 KNTC1P50748 2209 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 A0A1B0GTQ1 180 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 FAM47DPA6NHR8 397 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 DRGXA6NNA5 263 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 TNFSF14O43557 240 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 RNGTTO60942 597 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 RHOCP08134 193 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 CDK4P11802 303 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 GSCP56915 257 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 DLG2Q15700 870 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 FKBP15Q5T1M5 1219 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 CDKAL1Q5VV42 579 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 NAPEPLDQ6IQ20 393 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 NEK5Q6P3R8 708 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 TRIM72Q6ZMU5 477 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 GALNT15Q8N3T1 639 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 CHCHD4Q8N4Q1 142 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 ANKRD20A12PQ8NF67 263 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 ZCCHC14Q8WYQ9 949 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 SLC6A18Q96N87 628 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 TBCBQ99426 244 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 ELF4Q99607 663 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 SIK2Q9H0K1 926 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 GANQ9H2C0 597 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 ERVMER34-1Q9H9K5 563 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 PREBQ9HCU5 417 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 GDF3Q9NR23 364 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 PPARGC1AQ9UBK2 798 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 TMEM59LQ9UK28 342 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 CACNA1GO43497 2377 aa12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 GOLGA4Q13439 2230 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-207ENST00000481335 DOCK9Q9BZ29 2069 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 A0A1W2PR77 199 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 ILVBLA1L0T0 632 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 H0Y8X5 98 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 ENDOD1O94919 500 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 ADCY5O95622 1261 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 PRNPP04156 253 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 CYP1A1P04798 512 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 SRCP12931 536 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 FLT3P36888 993 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 ETFBP38117 255 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 ARRB1P49407 418 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 RNASE9P60153 205 aaKnown RBP12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 CDR2Q01850 454 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 NRG1Q02297 640 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 SLC20A2Q08357 652 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 ACCSLQ4AC99 568 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 HSP90AA4PQ58FG1 418 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 AGBL4Q5VU57 503 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 CCNI2Q6ZMN8 369 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 NOP9Q86U38 636 aaKnown RBP12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 PRPF39Q86UA1 669 aaKnown RBP12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 ZSCAN30Q86W11 494 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 MFSD2AQ8NA29 543 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 TMIEQ8NEW7 156 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 OR52K2Q8NGK3 314 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 PIP4K2CQ8TBX8 421 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 GBP4Q96PP9 640 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 CEP44Q9C0F1 390 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 AASDHPPTQ9NRN7 309 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 LMBRD1Q9NUN5 540 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 TOR4AQ9NXH8 423 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 NOCTQ9UK39 431 aaKnown RBP12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 PCDHGA1Q9Y5H4 931 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 TRPM6Q9BX84 2022 aa12.44□□□□□ -0.42
SQSTM1-207ENST00000481335 ARID1BQ8NFD5 2236 aaPredicted RBP12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3DA0A087WVF3 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3IA0A087WXS9 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3EA0A087X179 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3KA0A087X1G2 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3FA6NER0 549 aaPredicted RBP12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3LB9A6J9 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 E9PAM4 449 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 I6L893 689 aaPredicted RBP12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 CNTN5O94779 1100 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 MMEP08473 750 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3HP0C7X1 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 VAV1P15498 845 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 ZNF18P17022 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 MMP8P22894 467 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 OR1E1P30953 314 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 RXRGP48443 463 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 IRAK1P51617 712 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 JAM2P57087 298 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 KRT31Q15323 416 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 ARL13BQ3SXY8 428 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 SETMARQ53H47 684 aaPredicted RBP12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 ALFQ53S48 1182 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TAF3Q5VWG9 929 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3GQ6DHY5 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TBC1D3CQ6IPX1 549 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 RETSATQ6NUM9 610 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 Q6ZVU0 165 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 STRADAQ7RTN6 431 aa12.43□□□□□ -0.42
SQSTM1-207ENST00000481335 TMPRSS7Q7RTY8 843 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms