RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 M0QYT0 321 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 KCNK3O14649 394 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 GADD45BO75293 160 aaPredicted RBP13.9□□□□□ -0.18
CHD3-209ENST00000473376 PAGE1O75459 146 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 RFPL3O75679 317 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 LSM8O95777 96 aaKnown RBP13.9□□□□□ -0.18
CHD3-209ENST00000473376 STK19P49842 368 aaPredicted RBP13.9□□□□□ -0.18
CHD3-209ENST00000473376 STAT4Q14765 748 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 SLC25A52Q3SY17 297 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 PTPN20Q4JDL3 420 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 AGBL4Q5VU57 503 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 OR6B2Q6IFH4 312 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 LAYNQ6UX15 382 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 ZNF683Q8IZ20 524 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 DCAF4L2Q8NA75 395 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 RFFLQ8WZ73 363 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 IFT43Q96FT9 208 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 CNDP2Q96KP4 475 aaKnown RBP13.9□□□□□ -0.18
CHD3-209ENST00000473376 HAPLN3Q96S86 360 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 NRSN2Q9GZP1 204 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 SYNCQ9H7C4 482 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 SIX2Q9NPC8 291 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.9□□□□□ -0.18
CHD3-209ENST00000473376 VPS28Q9UK41 221 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 DNAJC12Q9UKB3 198 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 VANGL2Q9ULK5 521 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 ATRXP46100 2492 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 ACACAQ13085 2346 aa13.9□□□□□ -0.18
CHD3-209ENST00000473376 PTPRBP23467 1997 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 FOXN3O00409 490 aaPredicted RBP13.89□□□□□ -0.19
CHD3-209ENST00000473376 PRNPP04156 253 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 ERBB2P04626 1255 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 CKMT2P17540 419 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 MTIF2P46199 727 aaKnown RBP13.89□□□□□ -0.19
CHD3-209ENST00000473376 NME3Q13232 169 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 ACCSLQ4AC99 568 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 C6orf118Q5T5N4 469 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 GJB7Q6PEY0 223 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 LRRC31Q6UY01 552 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 KANSL1Q7Z3B3 1105 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 BNIPLQ7Z465 357 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 SLC47A2Q86VL8 602 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 PLPP6Q8IY26 295 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 TMEM145Q8NBT3 493 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 MSANTD4Q8NCY6 345 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 PIP4K2CQ8TBX8 421 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 NXPE2Q96DL1 559 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 C18orf8Q96DM3 657 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 HDAC8Q9BY41 377 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 NDST4Q9H3R1 872 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 DACH1Q9UI36 760 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 SARDHQ9UL12 918 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 DAAM1Q9Y4D1 1078 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 GTF3C3Q9Y5Q9 886 aa13.89□□□□□ -0.19
CHD3-209ENST00000473376 KNTC1P50748 2209 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 ILVBLA1L0T0 632 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 SRCP12931 536 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 VAV1P15498 845 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 CYP11B1P15538 503 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 ZNF18P17022 549 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 ACP1P24666 158 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 ACADVLP49748 655 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 PPP2CBP62714 309 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 PPP2CAP67775 309 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 E2F1Q01094 437 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 CENPCQ03188 943 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 CNTN1Q12860 1018 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 RTP5Q14D33 572 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 VWA3BQ502W6 1294 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 DPY19L2P1Q6NXN4 242 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 DHRS13Q6UX07 377 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 CIR1Q86X95 450 aaPredicted RBP13.88□□□□□ -0.19
CHD3-209ENST00000473376 DCP2Q8IU60 420 aaKnown RBP13.88□□□□□ -0.19
CHD3-209ENST00000473376 OR52K2Q8NGK3 314 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 OR2A12Q8NGT7 310 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 MDM1Q8TC05 714 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 CEP44Q9C0F1 390 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 TKTL2Q9H0I9 626 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 MUC3BQ9H195 1237 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 PIGVQ9NUD9 493 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 KLHL11Q9NVR0 708 aa13.88□□□□□ -0.19
CHD3-209ENST00000473376 PPARGC1AQ9UBK2 798 aaKnown RBP13.88□□□□□ -0.19
CHD3-209ENST00000473376 APC2O95996 2303 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 ITPR1Q14643 2758 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 WNT9AO14904 365 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 RTN2O75298 545 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 GRAP2O75791 330 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 ENDOD1O94919 500 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 JUPP14923 745 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 CHRNA3P32297 505 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 ETFBP38117 255 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 TAS2R38P59533 333 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 NRG1Q02297 640 aaPredicted RBP13.87□□□□□ -0.19
CHD3-209ENST00000473376 CYP4F3Q08477 520 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 ZNF211Q13398 564 aaPredicted RBP13.87□□□□□ -0.19
CHD3-209ENST00000473376 TPD52L1Q16890 204 aaPredicted RBP13.87□□□□□ -0.19
CHD3-209ENST00000473376 PIP5KL1Q5T9C9 394 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 OTUD1Q5VV17 481 aaPredicted RBP13.87□□□□□ -0.19
CHD3-209ENST00000473376 RETSATQ6NUM9 610 aa13.87□□□□□ -0.19
CHD3-209ENST00000473376 FBXL19Q6PCT2 694 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms