RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 IFNAR2P48551 515 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 DR1Q01658 176 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 SMAD2Q15796 467 aaKnown RBP8.35□□□□□ -1.07
NPHP3-204ENST00000469232 P3H1Q32P28 736 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 C6orf118Q5T5N4 469 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 ALG1LQ6GMV1 187 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 C4orf22Q6V702 233 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 MTSS1LQ765P7 747 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 TMEM25Q86YD3 366 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 KLHL7Q8IXQ5 586 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 CFAP52Q8N1V2 620 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 GPR161Q8N6U8 529 aaKnown RBP8.35□□□□□ -1.07
NPHP3-204ENST00000469232 CCHCR1Q8TD31 782 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 TFB1MQ8WVM0 346 aaKnown RBP8.35□□□□□ -1.07
NPHP3-204ENST00000469232 NXPE3Q969Y0 559 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 HAUS1Q96CS2 278 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 ASIC4Q96FT7 647 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 VAT1Q99536 393 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 LGMNQ99538 433 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 APOL5Q9BWW9 433 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 ZFP14Q9HCL3 533 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 SLC27A6Q9Y2P4 619 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 COL4A2P08572 1712 aa8.35□□□□□ -1.07
NPHP3-204ENST00000469232 A0A0A0MRY4 1105 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 ARHGAP42A6NI28 874 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 TRDMT1O14717 391 aaKnown RBP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 MATN3O15232 486 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 CHADO15335 359 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 KDELR3O43731 214 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 OPHN1O60890 802 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 TBL1XO60907 577 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 GAS8O95995 478 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 CYP17A1P05093 508 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 CISD3P0C7P0 127 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 RBL1P28749 1068 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 OR1E1P30953 314 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 PAPOLAP51003 745 aaKnown RBP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 GDF10P55107 478 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 GNA12Q03113 381 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 IL10RBQ08334 325 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 ZNF177Q13360 481 aaPredicted RBP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 HNRNPDQ14103 355 aaKnown RBP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 DMC1Q14565 340 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 POLD3Q15054 466 aaPredicted RBP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 DHCR24Q15392 516 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 ERCC6LQ2NKX8 1250 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 LY6G5CQ5SRR4 150 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 TMCO4Q5TGY1 634 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 C8orf74Q6P047 294 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 Q7L0L9 218 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 TFAP2DQ7Z6R9 452 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 CIR1Q86X95 450 aaPredicted RBP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 CCDC13Q8IYE1 715 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 CCDC105Q8IYK2 499 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 PHTF2Q8N3S3 785 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 DEFB123Q8N688 67 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 CCDC89Q8N998 374 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 GLIS1Q8NBF1 620 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 WFDC5Q8TCV5 224 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 HTR3CQ8WXA8 447 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 UBXN4Q92575 508 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 TADA1Q96BN2 335 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 HMCESQ96FZ2 354 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 ZNF419Q96HQ0 510 aaPredicted RBP8.34□□□□□ -1.07
NPHP3-204ENST00000469232 SPATA13Q96N96 652 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 FAM118BQ9BPY3 351 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 FEM1AQ9BSK4 669 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 TMEM121Q9BTD3 319 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 PLA2G2FQ9BZM2 168 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 HPS4Q9NQG7 708 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 GRHL1Q9NZI5 618 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 IGSF9Q9P2J2 1179 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 ZNF148Q9UQR1 794 aa8.34□□□□□ -1.07
NPHP3-204ENST00000469232 ZSCAN5CA6NGD5 496 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-204ENST00000469232 H7C0C1 242 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 TSPAN3O60637 253 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 NFATC1O95644 943 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 CD160O95971 181 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 PSMC3P17980 439 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 PTPN3P26045 913 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 ECHS1P30084 290 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 RPL22P35268 128 aaKnown RBP8.33□□□□□ -1.08
NPHP3-204ENST00000469232 ACVRL1P37023 503 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 EIF2DP41214 584 aaKnown RBP8.33□□□□□ -1.08
NPHP3-204ENST00000469232 ATP5OP48047 213 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 SNX1Q13596 522 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 RFTN1Q14699 578 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-204ENST00000469232 SLC14A2Q15849 920 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 TEX44Q53QW1 395 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 INO80DQ53TQ3 878 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-204ENST00000469232 FSCBQ5H9T9 825 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 TIGD7Q6NT04 549 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-204ENST00000469232 DARS2Q6PI48 645 aaKnown RBP8.33□□□□□ -1.08
NPHP3-204ENST00000469232 PARM1Q6UWI2 310 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 ARHGAP36Q6ZRI8 547 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 ZC3H18Q86VM9 953 aaKnown RBP8.33□□□□□ -1.08
NPHP3-204ENST00000469232 CNTD1Q8N815 330 aa8.33□□□□□ -1.08
NPHP3-204ENST00000469232 FAM71DQ8N9W8 422 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms