RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MCOLN2Q8IZK6 566 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 TC2NQ8N9U0 490 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 C3orf20Q8ND61 904 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 METTL5Q9NRN9 209 aaKnown RBP12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 RRN3Q9NYV6 651 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 PLK2Q9NYY3 685 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 USP36Q9P275 1121 aaKnown RBP12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 FTSJ1Q9UET6 329 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 ADAMTS1Q9UHI8 967 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 TMEM59LQ9UK28 342 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 TLR6Q9Y2C9 796 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 SNX11Q9Y5W9 270 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 RAD54BQ9Y620 910 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 USP9XQ93008 2570 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 A0A087X0T9 212 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 TCRBV5S1A1TA0A578 114 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 NPC1O15118 1278 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 IRAK2O43187 625 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 RTN2O75298 545 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 LATS1O95835 1130 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 TRUB2O95900 331 aaKnown RBP12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 FAM228BP0C875 321 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 OXTRP30559 389 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 EIF4A3P38919 411 aaKnown RBP12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 AFF3P51826 1226 aaKnown RBP12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 CLDN6P56747 220 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 RNASE9P60153 205 aaKnown RBP12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 PITX1P78337 314 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 CDK17Q00537 523 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 MAPK8IP2Q13387 824 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 KIF19Q2TAC6 998 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 INAVAQ3KP66 663 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 COLEC12Q5KU26 742 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 PHLDB2Q86SQ0 1253 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 BHMTQ93088 406 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 IGSF8Q969P0 613 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 NPY6RQ99463 290 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 ISCUQ9H1K1 167 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 IL17BQ9UHF5 180 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 STOML2Q9UJZ1 356 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 STAP1Q9ULZ2 295 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 ANKRD6Q9Y2G4 727 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 TEX15Q9BXT5 2789 aa12.29□□□□□ -0.44
SQSTM1-206ENST00000466342 NUMA1Q14980 2115 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 WASH3PC4AMC7 463 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 KCNK3O14649 394 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 BRINP1O60477 761 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 FTLP02792 175 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 KRT3P12035 628 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 RRM1P23921 792 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 FLT3P36888 993 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 CCT8P50990 548 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 TPMTP51580 245 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 TBX4P57082 545 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 EIF4EBP2Q13542 120 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 SLC18A3Q16572 532 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 ASTE1Q2TB18 679 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 MPPE1Q53F39 396 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 ADGRF1Q5T601 910 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 OTUD1Q5VV17 481 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 NUGGCQ68CJ6 796 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 TRNP1Q6NT89 227 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 DNAJC24Q6P3W2 148 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 DNAAF5Q86Y56 855 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 UNC45BQ8IWX7 931 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 EMC1Q8N766 993 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 DDI1Q8WTU0 396 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 UCMAQ8WVF2 138 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 NT5C3BQ969T7 300 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 TRIM11Q96F44 468 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 MED8Q96G25 268 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 SLC39A13Q96H72 371 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 FCRL2Q96LA5 508 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 LGMNQ99538 433 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 CHP1Q99653 195 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 SELENOOQ9BVL4 669 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 IRX2Q9BZI1 471 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 DEF6Q9H4E7 631 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 FAM204AQ9H8W3 233 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 IMPACTQ9P2X3 320 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 NENFQ9UMX5 172 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 DOPEY2Q9Y3R5 2298 aa12.28□□□□□ -0.44
SQSTM1-206ENST00000466342 CKAP5Q14008 2032 aa12.27□□□□□ -0.44
SQSTM1-206ENST00000466342 SIGLEC16A6NMB1 481 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 M0QYT0 321 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 ENC1O14682 589 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 TIMM44O43615 452 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 RFPL3O75679 317 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 GJB6O95452 261 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 APOEP02649 317 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 MYBL1P10243 752 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 SULT1E1P49888 294 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 UCNP55089 124 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 TMPRSS3P57727 454 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 EIF4HQ15056 248 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 TEAD4Q15561 434 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 TBC1D25Q3MII6 688 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 SLC25A52Q3SY17 297 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms