RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 TMCO5BA8MYB1 307 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 TTC34A8MYJ7 566 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 UPK3BL1B0FP48 263 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 UPK3BL2E5RIL1 263 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 M0QYT0 321 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 KIF2AO00139 706 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 SIN3BO75182 1162 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 SEMA4FO95754 770 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 FTLP02792 175 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 MYBL1P10243 752 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 PDGFRAP16234 1089 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 NUMBP49757 651 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 GALCP54803 685 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 OXCT1P55809 520 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 NYAP1Q6ZVC0 841 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 PIP4P1Q86T03 277 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 MSANTD4Q8NCY6 345 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 VCPIP1Q96JH7 1222 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 RPL10LQ96L21 214 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 PRMT1Q99873 361 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 LACRTQ9GZZ8 138 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 SGK2Q9HBY8 427 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 RRN3Q9NYV6 651 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.52■□□□□ 0.565e-15■■□□□ 14.4
SQSTM1-204ENST00000453046 STAP1Q9ULZ2 295 aa18.52■□□□□ 0.56
SQSTM1-204ENST00000453046 MUC22E2RYF6 1773 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 A0A0U1RQJ8 604 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 EDDM13A0A1B0GTR0 161 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 FAM170AA1A519 330 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 TARSL2A2RTX5 802 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 FSBPO95073 299 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 MATKP42679 507 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 SIM1P81133 766 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 SULT2A1Q06520 285 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 C1QBPQ07021 282 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 SLC14A1Q13336 389 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 AUHQ13825 339 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 FBXL22Q6P050 247 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 SND1Q7KZF4 910 aaKnown RBP eCLIP18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 MON1BQ7L1V2 547 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 ERICH1Q86X53 443 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 RFFLQ8WZ73 363 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 C18orf8Q96DM3 657 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 PABPC3Q9H361 631 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 LZTFL1Q9NQ48 299 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 FBXL12Q9NXK8 326 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 MYO1AQ9UBC5 1043 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 SLCO3A1Q9UIG8 710 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 VANGL2Q9ULK5 521 aa18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-204ENST00000453046 PCDH15Q96QU1 1955 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 FAM47DPA6NHR8 397 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 KIF5CO60282 957 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 TUBB4AP04350 444 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 C7P10643 843 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 MMP8P22894 467 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 MZF1P28698 734 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 RDXP35241 583 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 SULT1E1P49888 294 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 AFF3P51826 1226 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 ZNF177Q13360 481 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 CST6Q15828 149 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 C9orf64Q5T6V5 341 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 FAM102AQ5T9C2 384 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 IL27RAQ6UWB1 636 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 USP30Q70CQ3 517 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 MMAAQ8IVH4 418 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 MCOLN2Q8IZK6 566 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 IGSF8Q969P0 613 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 ZNF653Q96CK0 615 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 CALR3Q96L12 384 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 OMDQ99983 421 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 SIK2Q9H0K1 926 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 WDCPQ9H6R7 721 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 TRIM10Q9UDY6 481 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 PAXBP1Q9Y5B6 917 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 PCDHB9Q9Y5E1 797 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 HS3ST4Q9Y661 456 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 EPG5Q9HCE0 2579 aa18.5■□□□□ 0.55
SQSTM1-204ENST00000453046 CACNA1EQ15878 2313 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 SPAARA0A1B0GVQ0 90 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 MID1O15344 667 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 PAGE1O75459 146 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 RNASEH2AO75792 299 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 CER1O95813 267 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 CALB1P05937 261 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 CD59P13987 128 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 GGCXP38435 758 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 CSNK1EP49674 416 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 STK19P49842 368 aaPredicted RBP18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 DEUP1Q05D60 604 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 HNRNPDQ14103 355 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 TCEAL1Q15170 157 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 TEAD4Q15561 434 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 IFI16Q16666 785 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 ST3GAL2Q16842 350 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 RHOT2Q8IXI1 618 aa18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 RNF10Q8N5U6 811 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-204ENST00000453046 CPA5Q8WXQ8 436 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms