RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 GLDCP23378 1020 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 NOS2P35228 1153 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 ACTN2P35609 894 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 RECQLP46063 649 aaPredicted RBP13.65□□□□□ -0.22
HMGB3-204ENST00000448905 CDH4P55283 916 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 PPP2CBP62714 309 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 PPP2CAP67775 309 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 CNTN1Q12860 1018 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 SFMBT2Q5VUG0 894 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 CXorf57Q6NSI4 855 aaKnown RBP13.65□□□□□ -0.22
HMGB3-204ENST00000448905 FBXL19Q6PCT2 694 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 CIR1Q86X95 450 aaPredicted RBP13.65□□□□□ -0.22
HMGB3-204ENST00000448905 SPATS2Q86XZ4 545 aaKnown RBP13.65□□□□□ -0.22
HMGB3-204ENST00000448905 ZDHHC17Q8IUH5 632 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 FAM174AQ8TBP5 190 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 FAM131CQ96AQ9 280 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 SIK2Q9H0K1 926 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 PDCL3Q9H2J4 239 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 EVA1BQ9NVM1 165 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 KLHL11Q9NVR0 708 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 SARDHQ9UL12 918 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 VANGL2Q9ULK5 521 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 CLCA2Q9UQC9 943 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 TBC1D30Q9Y2I9 924 aa13.65□□□□□ -0.22
HMGB3-204ENST00000448905 TMEM131Q92545 1883 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 NEMP2A6NFY4 417 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 M0QYT0 321 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 TK2O00142 265 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 SLC31A1O15431 190 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 ZIC2O95409 532 aaPredicted RBP13.64□□□□□ -0.23
HMGB3-204ENST00000448905 PRNPP04156 253 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 ALPPL2P10696 532 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 ACP1P24666 158 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 AKT2P31751 481 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 NUMBP49757 651 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 BPIFB4P59827 614 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 DAB2P98082 770 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 SLC6A3Q01959 620 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 C19orf57Q0VDD7 668 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 TRIM65Q6PJ69 517 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 DCP2Q8IU60 420 aaKnown RBP13.64□□□□□ -0.23
HMGB3-204ENST00000448905 WDTC1Q8N5D0 677 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 SH2D3CQ8N5H7 860 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 LSM14AQ8ND56 463 aaKnown RBP13.64□□□□□ -0.23
HMGB3-204ENST00000448905 TMIEQ8NEW7 156 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 ALG14Q96F25 216 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 CRELD1Q96HD1 420 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 BBC3Q96PG8 261 aaPredicted RBP13.64□□□□□ -0.23
HMGB3-204ENST00000448905 CRACR2AQ9BSW2 395 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 ABCG4Q9H172 646 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 APEX2Q9UBZ4 518 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 STAP1Q9ULZ2 295 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 PCDHGC3Q9UN70 934 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 HS3ST4Q9Y661 456 aa13.64□□□□□ -0.23
HMGB3-204ENST00000448905 LAMA5O15230 3695 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 KPNA3O00505 521 aaPredicted RBP13.63□□□□□ -0.23
HMGB3-204ENST00000448905 PAGE1O75459 146 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 GRAP2O75791 330 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 RHOCP08134 193 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 THEGLP0DJG4 465 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 SLC9A1P19634 815 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 BMP6P22004 513 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 CHRNA3P32297 505 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 DUSP3P51452 185 aaPredicted RBP13.63□□□□□ -0.23
HMGB3-204ENST00000448905 CLCN6P51797 869 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 PITX1P78337 314 aaPredicted RBP13.63□□□□□ -0.23
HMGB3-204ENST00000448905 SLC20A2Q08357 652 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 KCNMA1Q12791 1236 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 EXOC3L4Q17RC7 722 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 POM121L1PQ3SYA9 428 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 BRMS1LQ5PSV4 323 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 AGBL4Q5VU57 503 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 Q6ZVU0 165 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 SETD3Q86TU7 594 aaPredicted RBP13.63□□□□□ -0.23
HMGB3-204ENST00000448905 C1orf131Q8NDD1 294 aaKnown RBP13.63□□□□□ -0.23
HMGB3-204ENST00000448905 RFFLQ8WZ73 363 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 PPP1R16AQ96I34 528 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 C1orf74Q96LT6 269 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 CPXM1Q96SM3 734 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 ACP6Q9NPH0 428 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 RWDD2AQ9UIY3 292 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 HS3ST2Q9Y278 367 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 OR51B4Q9Y5P0 310 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 NUMA1Q14980 2115 aa13.63□□□□□ -0.23
HMGB3-204ENST00000448905 A0A1W2PQU0 124 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 GTPBP10A4D1E9 387 aaKnown RBP13.62□□□□□ -0.23
HMGB3-204ENST00000448905 SIGLEC6O43699 453 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 SDC3O75056 442 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 PCDH8O95206 1070 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 PRKCSHP14314 528 aaPredicted RBP13.62□□□□□ -0.23
HMGB3-204ENST00000448905 DGKAP23743 735 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 METAP1P53582 386 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 RNASE9P60153 205 aaKnown RBP13.62□□□□□ -0.23
HMGB3-204ENST00000448905 CENPCQ03188 943 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 TPD52L1Q16890 204 aaPredicted RBP13.62□□□□□ -0.23
HMGB3-204ENST00000448905 C5orf22Q49AR2 442 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 RETSATQ6NUM9 610 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 SLC26A9Q7LBE3 791 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 HORMAD1Q86X24 394 aa13.62□□□□□ -0.23
HMGB3-204ENST00000448905 PASD1Q8IV76 773 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms