RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 UMPSP11172 480 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 DDR2Q16832 855 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 EID3Q8N140 333 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 KCNMB3Q9NPA1 279 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 KLHL1Q9NR64 748 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 TSPAN8P19075 237 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 NFKB1P19838 968 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 PRKAG1P54619 331 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 NEDD8Q15843 81 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 SLC45A4Q5BKX6 768 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 NEPROQ6NW34 567 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 COL26A1Q96A83 441 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 BCL9O00512 1426 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 ADGRA3Q8IWK6 1321 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 NRCAMQ92823 1304 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 CYP1A1P04798 512 aaPredicted RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 TRMT5Q32P41 509 aaKnown RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 CASP12Q6UXS9 341 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 MACC1Q6ZN28 852 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 USP45Q70EL2 814 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 CYP4Z2PQ8N1L4 340 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 EXOC2Q96KP1 924 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 TMEM134Q9H6X4 195 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 GEMIN8Q9NWZ8 242 aaKnown RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 PSTKQ8IV42 348 aaKnown RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 CERS5Q8N5B7 392 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 LENG9Q96B70 501 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 A0A0B4J269 797 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 PTGES3LE9PB15 166 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 PROCP04070 461 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 SHBGP04278 402 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 ENO2P09104 434 aaPredicted RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 COX7A2P14406 83 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 SPATA6LQ8N4H0 392 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 OR6Y1Q8NGX8 325 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 WDR36Q8NI36 951 aaKnown RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 LNX1Q8TBB1 728 aaPredicted RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 SNRNP25Q9BV90 132 aaKnown RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 ASB8Q9H765 288 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 VPS51Q9UID3 782 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 SIGLEC16A6NMB1 481 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 EPHB6O15197 1021 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 RHBDL3P58872 404 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 IL2P60568 153 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 C1DQ13901 141 aaKnown RBP17.43■□□□□ 0.38
PTPRF-209ENST00000438120 CAPSQ13938 189 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 POLNQ7Z5Q5 900 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 DSG4Q86SJ6 1040 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 C12orf29Q8N999 325 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 ELMO1Q92556 727 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 RGS14O43566 566 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 MYLPFQ96A32 169 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 OMDQ99983 421 aa17.43■□□□□ 0.38
PTPRF-209ENST00000438120 ATP5BP06576 529 aaKnown RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 MAXP61244 160 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 PRR23CQ6ZRP0 262 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 PIGZQ86VD9 579 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 TMEM132CQ8N3T6 1108 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 RNFT2Q96EX2 444 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 NLNQ9BYT8 704 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 NTRK1P04629 796 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 S100A3P33764 101 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 POLR2LP62875 67 aaKnown RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 MRPS6P82932 125 aaKnown RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 UNC5AQ6ZN44 842 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 USP50Q70EL3 339 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 RGL4Q8IZJ4 473 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 FBXL16Q8N461 479 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 UXS1Q8NBZ7 420 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 PWWP2AQ96N64 755 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 PRRG3Q9BZD7 231 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 MAP10Q9P2G4 905 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 PIPSLA2A3N6 862 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 TBL1XO60907 577 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 CNPP09543 421 aaKnown RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 FAM58BPP0C7Q3 252 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 CCDC166P0CW27 439 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 HDCP19113 662 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 PPIL2Q13356 520 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 GSTA3Q16772 222 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 TMEM161BQ8NDZ6 487 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 OR5B17Q8NGF7 314 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 FAM163AQ96GL9 167 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 BDH2Q9BUT1 245 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 CDT1Q9H211 546 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 STMN3Q9NZ72 180 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 INVSQ9Y283 1065 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 HIRAP54198 1017 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 CCDC92Q53HC0 331 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 VGLL2Q8N8G2 317 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 AENQ8WTP8 325 aaKnown RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 FAM126AQ9BYI3 521 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 A0A087X1B8 175 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 FFAR3O14843 346 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 GPR42O15529 346 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 CD52P31358 61 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 MARCKSL1P49006 195 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 ACSM2AQ08AH3 577 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 TRIM71Q2Q1W2 868 aaKnown RBP17.42■□□□□ 0.38
PTPRF-209ENST00000438120 ACSM2BQ68CK6 577 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms