RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 LILRB5O75023 590 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 KRT7P08729 469 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 CD48P09326 243 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 VAV1P15498 845 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 ERCC2P18074 760 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 COMTP21964 271 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 ETFBP38117 255 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 ZNF135P52742 658 aaPredicted RBP12.77□□□□□ -0.37
SKA1-203ENST00000417656 ARF5P84085 180 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 MMRN1Q13201 1228 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 CAMK2GQ13555 558 aaPredicted RBP12.77□□□□□ -0.37
SKA1-203ENST00000417656 POLD3Q15054 466 aaPredicted RBP12.77□□□□□ -0.37
SKA1-203ENST00000417656 HNRNPA1L2Q32P51 320 aaKnown RBP12.77□□□□□ -0.37
SKA1-203ENST00000417656 ATP13A4Q4VNC1 1196 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 ZFYVE27Q5T4F4 411 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 KIAA1324Q6UXG2 1013 aaKnown RBP12.77□□□□□ -0.37
SKA1-203ENST00000417656 POLNQ7Z5Q5 900 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 ZNF354CQ86Y25 554 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 PGBD3Q8N328 593 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 NPWQ8N729 165 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 KDM1BQ8NB78 822 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 NETO2Q8NC67 525 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 CCDC112Q8NEF3 446 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 ATRIPQ8WXE1 791 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 TSC1Q92574 1164 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 HMCESQ96FZ2 354 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 CELF6Q96J87 481 aaKnown RBP12.77□□□□□ -0.37
SKA1-203ENST00000417656 CSPG4P5Q96PW8 444 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 PHOX2BQ99453 314 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 MAGEH1Q9H213 219 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 PRSS16Q9NQE7 514 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 TRIM10Q9UDY6 481 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 MFHAS1Q9Y4C4 1052 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 PLXND1Q9Y4D7 1925 aa12.77□□□□□ -0.37
SKA1-203ENST00000417656 CCDC163A0A0D9SF12 145 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 RASA4BC9J798 803 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 K7ERQ8 282 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 PJA2O43164 708 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 ARHGAP6O43182 974 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 RASA4O43374 803 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 SIN3BO75182 1162 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 ZMPSTE24O75844 475 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 MT-CO1P00395 513 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 KRT1P04264 644 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 SRCP12931 536 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 TNNT1P13805 278 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 AMPD1P23109 780 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 NBL1P41271 181 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 HCAR3P49019 387 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 ARSEP51690 589 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 COPAP53621 1224 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 CCZ1BP86790 482 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 CCZ1P86791 482 aaPredicted RBP12.76□□□□□ -0.37
SKA1-203ENST00000417656 DPYSL3Q14195 570 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 C11orf63Q6NUN7 778 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 Q6ZVU0 165 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 LRRC8AQ8IWT6 810 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 UMODL1-AS1Q8N2C9 162 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 SH2D3CQ8N5H7 860 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 OR2T3Q8NH03 318 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 TPCN2Q8NHX9 752 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 FAM71BQ8TC56 605 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 MRGPRX1Q96LB2 322 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 CALN1Q9BXU9 219 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 ACE2Q9BYF1 805 aaPredicted RBP12.76□□□□□ -0.37
SKA1-203ENST00000417656 MKRN2Q9H000 416 aaKnown RBP12.76□□□□□ -0.37
SKA1-203ENST00000417656 KLC2Q9H0B6 622 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 CD93Q9NPY3 652 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 HS3ST2Q9Y278 367 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 INVSQ9Y283 1065 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 ARIH1Q9Y4X5 557 aaPredicted RBP12.76□□□□□ -0.37
SKA1-203ENST00000417656 ACTL7AQ9Y615 435 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 DUSP10Q9Y6W6 482 aa12.76□□□□□ -0.37
SKA1-203ENST00000417656 EDDM13A0A1B0GTR0 161 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 LRRD1A4D1F6 860 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 BTNL10A8MVZ5 291 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 DCLK1O15075 740 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 ZBTB24O43167 697 aaPredicted RBP12.75□□□□□ -0.37
SKA1-203ENST00000417656 SMAD6O43541 496 aaKnown RBP12.75□□□□□ -0.37
SKA1-203ENST00000417656 HRO43593 1189 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 ATP9BO43861 1147 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 RPP40O75818 363 aaKnown RBP12.75□□□□□ -0.37
SKA1-203ENST00000417656 NNMTP40261 264 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 SLC1A1P43005 524 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 SERPINH1P50454 418 aaKnown RBP12.75□□□□□ -0.37
SKA1-203ENST00000417656 NAP1L1P55209 391 aaKnown RBP12.75□□□□□ -0.37
SKA1-203ENST00000417656 YBEYP58557 167 aaPredicted RBP12.75□□□□□ -0.37
SKA1-203ENST00000417656 PARP15Q460N3 678 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 ACCSLQ4AC99 568 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 C9orf64Q5T6V5 341 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 RETSATQ6NUM9 610 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 C22orf39Q6P5X5 142 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 LEKR1Q6ZMV7 388 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 ARHGAP12Q8IWW6 846 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 ATP11CQ8NB49 1132 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 KCTD6Q8NC69 237 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 FRS2Q8WU20 508 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 GAB3Q8WWW8 586 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 RLN3Q8WXF3 142 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 ZNF670Q9BS34 389 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms