RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 LIN52Q52LA3 116 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 GRTP1Q5TC63 336 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 ARMC3Q5W041 872 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 ZNF280DQ6N043 979 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 TMC7Q7Z402 723 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 CEP97Q8IW35 865 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 GPC2Q8N158 579 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 PPFIBP2Q8ND30 876 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 SH3RF2Q8TEC5 729 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 KLHL32Q96NJ5 620 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 KCNK16Q96T55 309 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 RHOBTB2Q9BYZ6 727 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 SUDS3Q9H7L9 328 aaPredicted RBP10.07□□□□□ -0.8
SS18-203ENST00000415083 CRTAC1Q9NQ79 661 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 RIMS3Q9UJD0 308 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 GINS2Q9Y248 185 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 COL1A2P08123 1366 aa10.07□□□□□ -0.8
SS18-203ENST00000415083 DOCK3Q8IZD9 2030 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 M0QYT0 321 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 XPO1O14980 1071 aaKnown RBP10.06□□□□□ -0.8
SS18-203ENST00000415083 TOMM70O94826 608 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 MMP3P08254 477 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 GRK2P25098 689 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 SERPINB5P36952 375 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 CDKL1Q00532 357 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 NME3Q13232 169 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 LAMC2Q13753 1193 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 SPANXN3Q5MJ09 141 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 FBXO47Q5MNV8 452 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 SLC27A1Q6PCB7 646 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 SATL1Q86VE3 508 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 APLFQ8IW19 511 aaPredicted RBP10.06□□□□□ -0.8
SS18-203ENST00000415083 SPATA6LQ8N4H0 392 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 SMG8Q8ND04 991 aaKnown RBP10.06□□□□□ -0.8
SS18-203ENST00000415083 CCNYQ8ND76 341 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PPP1R14CQ8TAE6 165 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 RCOR3Q9P2K3 495 aaPredicted RBP10.06□□□□□ -0.8
SS18-203ENST00000415083 INPP5FQ9Y2H2 1132 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PTPRDP23468 1912 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 HHLA1C9JL84 531 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PTGESO14684 152 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PGK1P00558 417 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 SLC35E2BP0CK96 405 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PIK3R1P27986 724 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 GSTT1P30711 240 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PIGGQ5H8A4 983 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PID1Q7Z2X4 250 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PSTKQ8IV42 348 aaKnown RBP10.06□□□□□ -0.8
SS18-203ENST00000415083 MFN1Q8IWA4 741 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 TDRD5Q8NAT2 981 aaKnown RBP10.06□□□□□ -0.8
SS18-203ENST00000415083 URGCPQ8TCY9 931 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 DUSP16Q9BY84 665 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 UNKQ9C0B0 810 aaKnown RBP10.06□□□□□ -0.8
SS18-203ENST00000415083 OSBPL2Q9H1P3 480 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 VCXQ9H320 206 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 PDP2Q9P2J9 529 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 TTC3P53804 2025 aa10.06□□□□□ -0.8
SS18-203ENST00000415083 DNAJA2O60884 412 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 POLBP06746 335 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 PGFP49763 221 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 LILRA4P59901 499 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 NAB1Q13506 487 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 OTOP3Q7RTS5 596 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 ERO1BQ86YB8 467 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 SULF1Q8IWU6 871 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 KLHDC8BQ8IXV7 354 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 TTC39CQ8N584 583 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 B3GALNT2Q8NCR0 500 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 FAM110BQ8TC76 370 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 LENG1Q96BZ8 264 aaPredicted RBP10.05□□□□□ -0.8
SS18-203ENST00000415083 OPTNQ96CV9 577 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 HSFY1Q96LI6 401 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 HAPLN3Q96S86 360 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 SMOQ99835 787 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 RTKNQ9BST9 563 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 KLHL4Q9C0H6 718 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 FAM49AQ9H0Q0 323 aaPredicted RBP10.05□□□□□ -0.8
SS18-203ENST00000415083 VANGL2Q9ULK5 521 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 AK5Q9Y6K8 562 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 TRPM7Q96QT4 1865 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 AURKAO14965 403 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 VILLO15195 856 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 PHGDHO43175 533 aaKnown RBP10.05□□□□□ -0.8
SS18-203ENST00000415083 NFKB1P19838 968 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 ADRA1BP35368 520 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 PPIDQ08752 370 aaKnown RBP10.05□□□□□ -0.8
SS18-203ENST00000415083 KYAT1Q16773 422 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 ARL13AQ5H913 290 aaPredicted RBP10.05□□□□□ -0.8
SS18-203ENST00000415083 DENND5AQ6IQ26 1287 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.05□□□□□ -0.8
SS18-203ENST00000415083 CNDP1Q96KN2 507 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 GCNAQ96QF7 691 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 HNRNPABQ99729 332 aaKnown RBP10.05□□□□□ -0.8
SS18-203ENST00000415083 FTHL17Q9BXU8 183 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 SSX2IPQ9Y2D8 614 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 CSADQ9Y600 493 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 PATJQ8NI35 1801 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 NRCAMQ92823 1304 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 NEMP1O14524 444 aa10.05□□□□□ -0.8
SS18-203ENST00000415083 ACOT8O14734 319 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms