RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SLC35B2Q8TB61 432 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 ATP2A3Q93084 1043 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 MYEOVQ96EZ4 313 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 SERPINB12Q96P63 405 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 PCDH9Q9HC56 1237 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 SPHK2Q9NRA0 654 aa13.76□□□□□ -0.21
LIMS1-204ENST00000409441 NUP210Q8TEM1 1887 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-204ENST00000409441 E9PAM4 449 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 GFRA2O00451 464 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 CREB3O43889 395 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 LRIG2O94898 1065 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 ATP5DP30049 168 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 ARSEP51690 589 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 CDH6P55285 790 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 TDGQ13569 410 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 RUNX3Q13761 415 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 KRT81Q14533 505 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 DHCR24Q15392 516 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 DPYSL2Q16555 572 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 MPPE1Q53F39 396 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 ARTNQ5T4W7 220 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 PCGF5Q86SE9 256 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 SPATS2Q86XZ4 545 aaKnown RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 ZNF683Q8IZ20 524 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 DDI1Q8WTU0 396 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 IGSF8Q969P0 613 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 RPRD1AQ96P16 312 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 KCTD15Q96SI1 283 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 HPS4Q9NQG7 708 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 GTSE1Q9NYZ3 720 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 FARP1Q9Y4F1 1045 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 OTOL1A6NHN0 477 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 DRGXA6NNA5 263 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 ARNTLO00327 626 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 NDUFAB1O14561 156 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 NFATC1O95644 943 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 CYBBP04839 570 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 ABHD2P08910 425 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 IL4RP24394 825 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 VPS41P49754 854 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 SGSHP51688 502 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 RPS24P62847 133 aaKnown RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 SEMA3BQ13214 749 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 MORF4L2Q15014 288 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 PDK2Q15119 407 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 ANO4Q32M45 955 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 P3H1Q32P28 736 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 C5orf22Q49AR2 442 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 RABGAP1LQ5R372 815 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 TTC19Q6DKK2 380 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 RWDD4Q6NW29 188 aaKnown RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 B4GALNT4Q76KP1 1039 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 TAOK1Q7L7X3 1001 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 MAP7D3Q8IWC1 876 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 TTC8Q8TAM2 541 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 BHMTQ93088 406 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 P2RY11Q96G91 374 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 EPAS1Q99814 870 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 FAM118BQ9BPY3 351 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 PHACTR1Q9C0D0 580 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 FAM107BQ9H098 131 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 ECT2Q9H8V3 914 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 PCDH18Q9HCL0 1135 aa13.75□□□□□ -0.21
LIMS1-204ENST00000409441 TPX2Q9ULW0 747 aaKnown RBP13.75□□□□□ -0.21
LIMS1-204ENST00000409441 UNC80Q8N2C7 3258 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 HELZP42694 1942 aaKnown RBP13.74□□□□□ -0.21
LIMS1-204ENST00000409441 IGLV3-10A0A075B6K4 115 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 TLDC2A0PJX2 215 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 EEF2KO00418 725 aaKnown RBP13.74□□□□□ -0.21
LIMS1-204ENST00000409441 EBAG9O00559 213 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 TBL1XO60907 577 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 ADH1CP00326 375 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 CYP17A1P05093 508 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 CD48P09326 243 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 MMP13P45452 471 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 HCAR3P49019 387 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 NR1H3Q13133 447 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 MANEALQ5VSG8 457 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 FOXR1Q6PIV2 292 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 VSIG1Q86XK7 387 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 RNF135Q8IUD6 432 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.74□□□□□ -0.21
LIMS1-204ENST00000409441 CPA6Q8N4T0 437 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 HJURPQ8NCD3 748 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-204ENST00000409441 PRICKLE1Q96MT3 831 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-204ENST00000409441 TTC25Q96NG3 672 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 BBS2Q9BXC9 721 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 CALN1Q9BXU9 219 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 LRRC4CQ9HCJ2 640 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 PLK2Q9NYY3 685 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 NINJ2Q9NZG7 142 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 MPP6Q9NZW5 540 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 PPARGC1AQ9UBK2 798 aaKnown RBP13.74□□□□□ -0.21
LIMS1-204ENST00000409441 RSPH14Q9UHP6 348 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 SHOC2Q9UQ13 582 aa13.74□□□□□ -0.21
LIMS1-204ENST00000409441 NEDD8-MDP1E9PL57 170 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 H3BRJ5 948 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 APOC4-APOC2K7ER74 178 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 SMAPO00193 183 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 NARSO43776 548 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms