RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ATP13A5Q4VNC0 1218 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ABHD15Q6UXT9 468 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ZNF564Q8TBZ8 553 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 LMX1AQ8TE12 382 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 KAZALD1Q96I82 304 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 MCEEQ96PE7 176 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CDT1Q9H211 546 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 TDP1Q9NUW8 608 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 GTSE1Q9NYZ3 720 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CDH7Q9ULB5 785 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 R3HDM2Q9Y2K5 976 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 C2CD2Q9Y426 696 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 STRCQ7RTU9 1775 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ZSCAN5CA6NGD5 496 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 H7C0S8 307 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 BMP10O95393 424 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ECEL1O95672 775 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 TNFP01375 233 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 KLK3P07288 261 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ELFN1P0C7U0 828 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CYP3A5P20815 502 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 HMOX2P30519 316 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 HNRNPH1P31943 449 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 FMO5P49326 533 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CLCNKBP51801 687 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PLTPP55058 493 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 FAM47EQ6ZV65 393 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 TTC29Q8NA56 475 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CPA5Q8WXQ8 436 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 MAGOHBQ96A72 148 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 HES6Q96HZ4 224 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 AGPAT5Q9NUQ2 364 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PLK2Q9NYY3 685 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PGRMC1O00264 195 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 GYS2P54840 703 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CYP24A1Q07973 514 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 LLGL1Q15334 1064 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SHROOM1Q2M3G4 852 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 LVRNQ6Q4G3 990 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 KRT77Q7Z794 578 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 MON1AQ86VX9 555 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 FAM228AQ86W67 206 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ZNF677Q86XU0 584 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 BEND7Q8N7W2 519 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 REXO5Q96IC2 774 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 FAM124BQ9H5Z6 455 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 VANGL2Q9ULK5 521 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CRYL1Q9Y2S2 319 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 FIS1Q9Y3D6 152 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 EPN1Q9Y6I3 576 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 LTN1O94822 1766 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 NHSL1Q5SYE7 1610 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 A0A1W2PPC1 479 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 TMX2-CTNND1H3BSU7 103 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 RHOP08100 348 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SERPINF2P08697 491 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 UBTFL6P0CB48 400 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CCNCP24863 283 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CORO1AP31146 461 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PGM1P36871 562 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CLK3P49761 638 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 RASGRP2Q7LDG7 609 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CROCCP3Q8IVE0 287 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 RNF25Q96BH1 459 aaPredicted RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ZFP42Q96MM3 310 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CLPBQ9H078 707 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SEMA6BQ9H3T3 888 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 AGPAT3Q9NRZ7 376 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 LMBRD1Q9NUN5 540 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SCN3BQ9NY72 215 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PIK3C2AO00443 1686 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ATP9AO75110 1047 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 RPP40O75818 363 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PCCBP05166 539 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 VHLP40337 213 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SLCO1A2P46721 670 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 GATMP50440 423 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 SERPINH1P50454 418 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PPP2R2AP63151 447 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 HPCAP84074 193 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 TMPRSS15P98073 1019 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 MTF1Q14872 753 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 EFTUD2Q15029 972 aaKnown RBP eCLIP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 MAPRE2Q15555 327 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 RESP18Q5W5W9 173 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ARHGAP17Q68EM7 881 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 FAM180AQ6UWF9 173 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 MAMDC4Q6UXC1 1216 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 DGLUCYQ7Z3D6 616 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CBWD2Q8IUF1 395 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ZDHHC17Q8IUH5 632 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 AVL9Q8NBF6 648 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ATXN2LQ8WWM7 1075 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 KLHDC7BQ96G42 594 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 TMEM209Q96SK2 561 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 FMO2Q99518 471 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 ULBP1Q9BZM6 244 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 NOL6Q9H6R4 1146 aaKnown RBP7.43□□□□□ -1.22
SCN9A-202ENST00000409435 TBC1D17Q9HA65 648 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 NT5MQ9NPB1 228 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms