RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 MTG2Q9H4K7 406 aa20.31■□□□□ 0.84
PDLIM2-207ENST00000409417 NOL6Q9H6R4 1146 aaKnown RBP20.31■□□□□ 0.84
PDLIM2-207ENST00000409417 PRDM16Q9HAZ2 1276 aa20.31■□□□□ 0.84
PDLIM2-207ENST00000409417 A0A0A6YYK5 440 aaPredicted RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 TMEM110-MUSTN1A8MSY1 372 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 MT-CO1P00395 513 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 ACVRL1P37023 503 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 ARL4AP40617 200 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 CLCN6P51797 869 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 HADHBP55084 474 aaKnown RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 YBEYP58557 167 aaPredicted RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 DPYSQ14117 519 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 SIM2Q14190 667 aaPredicted RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 C9orf64Q5T6V5 341 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 CEP68Q76N32 757 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 POLNQ7Z5Q5 900 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 METTL3Q86U44 580 aaKnown RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 SH2D3CQ8N5H7 860 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 SUMF1Q8NBK3 374 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 SIPA1Q96FS4 1042 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 SLC6A17Q9H1V8 727 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 REXO2Q9Y3B8 237 aaKnown RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 H3BRJ5 948 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 SIN3BO75182 1162 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 ZNF217O75362 1048 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 LMNAP02545 664 aaKnown RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 KRT7P08729 469 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 ERCC2P18074 760 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 GLDCP23378 1020 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 P2RY2P41231 377 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 NOP2P46087 812 aaKnown RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 TAS2R40P59535 323 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 DLG2Q15700 870 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 MAP7D1Q3KQU3 841 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 PARP15Q460N3 678 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 KIAA1324Q6UXG2 1013 aaKnown RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 LINGO4Q6UY18 593 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 ATP11CQ8NB49 1132 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 FAM71BQ8TC56 605 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 PRCCQ92733 491 aaPredicted RBP20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 PTPRN2Q92932 1015 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 PCDH18Q9HCL0 1135 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 HPCAL4Q9UM19 191 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 TFR2Q9UP52 801 aa20.3■□□□□ 0.84
PDLIM2-207ENST00000409417 SDK1Q7Z5N4 2213 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 OTOGLQ3ZCN5 2332 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 RASA4BC9J798 803 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 RASA4O43374 803 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 SRCP12931 536 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 SLC1A1P43005 524 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 ACCSLQ4AC99 568 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 PRR23BQ6ZRT6 265 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 C11orf74Q86VG3 221 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 RLN3Q8WXF3 142 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 TSC1Q92574 1164 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 SPACA7Q96KW9 195 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 CSPG4P5Q96PW8 444 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 RSPH9Q9H1X1 276 aaPredicted RBP20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 RCOR3Q9P2K3 495 aaPredicted RBP20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 SMG5Q9UPR3 1016 aaKnown RBP20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 INVSQ9Y283 1065 aa20.29■□□□□ 0.84
PDLIM2-207ENST00000409417 RCCD1A6NED2 376 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 K7ERQ8 282 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 DCLK1O15075 740 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 KDELR3O43731 214 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 SERPINH1P50454 418 aaKnown RBP20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 ARSEP51690 589 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 NDST2P52849 883 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 CDH6P55285 790 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 GEMIN4P57678 1058 aaKnown RBP20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 ARF5P84085 180 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 ZBTB16Q05516 673 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 KRT81Q14533 505 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 ELAVL3Q14576 367 aaKnown RBP20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 ATP13A4Q4VNC1 1196 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 KCTD6Q8NC69 237 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 ACRBPQ8NEB7 543 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 HMCESQ96FZ2 354 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 ZC3H10Q96K80 434 aaKnown RBP20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 KLC2Q9H0B6 622 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 LRRC19Q9H756 370 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 RAB23Q9ULC3 237 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 FRYLO94915 3013 aa20.28■□□□□ 0.84
PDLIM2-207ENST00000409417 PTPRZ1P23471 2315 aaPredicted RBP20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 SMAD6O43541 496 aaKnown RBP20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 RNASEH1O60930 286 aaKnown RBP20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 VAV1P15498 845 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 IL4RP24394 825 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 GJC1P36383 396 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 VAV2P52735 878 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 RPS14P62263 151 aaKnown RBP20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 SERINC3Q13530 473 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 PDK2Q15119 407 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 LRRC38Q5VT99 294 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 AFMIDQ63HM1 303 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 ZNF776Q68DI1 518 aaPredicted RBP20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 KBTBD6Q86V97 674 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 LZTR1Q8N653 840 aa20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 CALR3Q96L12 384 aaKnown RBP20.27■□□□□ 0.84
PDLIM2-207ENST00000409417 FAM129BQ96TA1 746 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms