RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 NAT8LQ8N9F0 302 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 HJURPQ8NCD3 748 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 RIN3Q8TB24 985 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 NSMCE1Q8WV22 266 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 LINC00597Q9H2U6 94 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CENPHQ9H3R5 247 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ZNF212Q9UDV6 495 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 HPCAL4Q9UM19 191 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 SHOC2Q9UQ13 582 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 FARP1Q9Y4F1 1045 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 ACTL7AQ9Y615 435 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 VCANP13611 3396 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 TTC24A2A3L6 582 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 USP12O75317 370 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 PPFIA2O75334 1257 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 GLP2RO95838 553 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 NFKB1P19838 968 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 GLDCP23378 1020 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 FSHRP23945 695 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CD68P34810 354 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 GRIA1P42261 906 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ARL4CP56559 192 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 MAXP61244 160 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 IFFO1Q0D2I5 559 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 SLC10A7Q0GE19 358 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 OLIG2Q13516 323 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 SERINC3Q13530 473 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 SLC29A2Q14542 456 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 UAP1Q16222 522 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 PARP6Q2NL67 630 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 FNBP1LQ5T0N5 605 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 RNF219Q5W0B1 726 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 DENND2CQ68D51 928 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 TIGD7Q6NT04 549 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 POTEHQ6S545 545 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 HTR3DQ70Z44 454 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CENPUQ71F23 418 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CNTD1Q8N815 330 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 EXOC4Q96A65 974 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ZNF419Q96HQ0 510 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 TEKT5Q96M29 485 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CDCA3Q99618 268 aaPredicted RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 APOL2Q9BQE5 337 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 FAM129AQ9BZQ8 928 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CDC42EP4Q9H3Q1 356 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 ATP13A1Q9HD20 1204 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 NT5MQ9NPB1 228 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 CLDND1Q9NY35 253 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 VPS28Q9UK41 221 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 PLAAQ9Y263 795 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 ZNF510Q9Y2H8 683 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 WNT6Q9Y6F9 365 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.79□□□□□ -1.8
RTN4-208ENST00000404909 NOTCH4Q99466 2003 aa3.79□□□□□ -1.8
RTN4-208ENST00000404909 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 SMIM23A6NLE4 172 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 NEDD8-MDP1E9PL57 170 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 MAP2K7O14733 419 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 NDC80O14777 642 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 CHADO15335 359 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 MT-CYBP00156 380 aaPredicted RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 CYBBP04839 570 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 SP100P23497 879 aaPredicted RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 MZF1P28698 734 aaPredicted RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 WEE1P30291 646 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 FDFT1P37268 417 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 MAGEA4P43358 317 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 RENBPP51606 427 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 OXCT1P55809 520 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 SESN2P58004 480 aaPredicted RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 YBEYP58557 167 aaPredicted RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 KCNJ11Q14654 390 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 MSS51Q4VC12 460 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 MARC1Q5VT66 337 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 AFMIDQ63HM1 303 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 ITPRIPL1Q6GPH6 555 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 CASC4Q6P4E1 433 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 LINGO4Q6UY18 593 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 C4orf22Q6V702 233 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 HOOK3Q86VS8 718 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 TMEM25Q86YD3 366 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 LRRC49Q8IUZ0 686 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 GOLGA6L1Q8N7Z2 621 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 SPATA22Q8NHS9 363 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 WFDC5Q8TCV5 224 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 FGF13Q92913 245 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 ARHGEF2Q92974 986 aaKnown RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 SERPINB12Q96P63 405 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 ZIM3Q96PE6 472 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 TSGA13Q96PP4 275 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 VAT1Q99536 393 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 TSPYL1Q9H0U9 437 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 PABPC3Q9H361 631 aaKnown RBP3.78□□□□□ -1.8
RTN4-208ENST00000404909 DZANK1Q9NVP4 752 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 MYOFQ9NZM1 2061 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 STOML2Q9UJZ1 356 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 TRHDEQ9UKU6 1024 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 CLEC4EQ9ULY5 219 aa3.78□□□□□ -1.8
RTN4-208ENST00000404909 MAD1L1Q9Y6D9 718 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms