RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 UBL4BQ8N7F7 174 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 TTC13Q8NBP0 860 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 VAT1Q99536 393 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 GORASP1Q9BQQ3 440 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 BBS2Q9BXC9 721 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 SLC39A8Q9C0K1 460 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 RSPH9Q9H1X1 276 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 ELOVL2Q9NXB9 296 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 KIF2AO00139 706 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 SLC7A4O43246 635 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 DLDP09622 509 aaKnown RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 TPI1P60174 286 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 HNRNPDQ14103 355 aaKnown RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 GAS6Q14393 721 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 CYTH1Q15438 398 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ATP13A4Q4VNC1 1196 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 TIGD7Q6NT04 549 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 RFWD3Q6PCD5 774 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 IL17RCQ8NAC3 791 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 MAIP1Q8WWC4 291 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ZNF419Q96HQ0 510 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 KDM4CQ9H3R0 1056 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 USP29Q9HBJ7 922 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 HEBP1Q9NRV9 189 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ETNK2Q9NVF9 386 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 DEC1Q9P2X7 70 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 VANGL2Q9ULK5 521 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 SNX10Q9Y5X0 201 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 C5orf60A6NFR6 353 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 RASA4BC9J798 803 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 MTSS1O43312 755 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 RASA4O43374 803 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 HTRA2O43464 458 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ZRANB2O95218 330 aaKnown RBP eCLIP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ITGAVP06756 1048 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 CSKP41240 450 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 CDH6P55285 790 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 GRSF1Q12849 480 aaKnown RBP eCLIP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 GRM3Q14832 879 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 SPDYCQ5MJ68 293 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 C9orf64Q5T6V5 341 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 C4orf22Q6V702 233 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 CREG2Q8IUH2 290 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 GPIHBP1Q8IV16 184 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 PSKH2Q96QS6 385 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 NACA2Q9H009 215 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 TBC1D17Q9HA65 648 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 TYW5A2RUC4 315 aaKnown RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ARHGAP42A6NI28 874 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 NEDD8-MDP1E9PL57 170 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 TRAFD1O14545 582 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 AP1G1O43747 822 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ATG13O75143 517 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 IRF1P10914 325 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 SRCP12931 536 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ARL4AP40617 200 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 RNASE9P60153 205 aaKnown RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ADCY2Q08462 1091 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ZNF177Q13360 481 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 MSLNQ13421 630 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 CCNG2Q16589 344 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 HNRNPA1L2Q32P51 320 aaKnown RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 MBLAC2Q68D91 279 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 TPRG1Q6ZUI0 275 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 SLC13A5Q86YT5 568 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 MFN1Q8IWA4 741 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 APCDD1Q8J025 514 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 PPM1EQ8WY54 764 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 ZFYVE19Q96K21 471 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 LYSMD1Q96S90 227 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 PRRX2Q99811 253 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 HDAC8Q9BY41 377 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 HOMER3Q9NSC5 361 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 NFKBIL1Q9UBC1 381 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-202ENST00000394943 VPS51Q9UID3 782 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 MYLKQ15746 1914 aa7.17□□□□□ -1.26
LIMA1-202ENST00000394943 A0A1W2PQ67 120 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 MFSD11O43934 449 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 GCATO75600 419 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 CSPG5O95196 566 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 TCP1P17987 556 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 MX2P20592 715 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 MZF1P28698 734 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 ETF1P62495 437 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 USP30Q70CQ3 517 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PEX26Q7Z412 305 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PHLDB2Q86SQ0 1253 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 SEC14L1Q92503 715 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PTPRN2Q92932 1015 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PPP1R2P1Q96PQ5 205 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 FAM129BQ96TA1 746 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 C2orf49Q9BVC5 232 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 OSBPL8Q9BZF1 889 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 SLITRK6Q9H5Y7 841 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 DHX35Q9H5Z1 703 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 SUN2Q9UH99 717 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 LRRK1Q38SD2 2015 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PLXNB3Q9ULL4 1909 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 EDDM13A0A1B0GTR0 161 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms