RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 RELAQ04206 551 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 SOX4Q06945 474 aaPredicted RBP11.37□□□□□ -0.59
CUX1-204ENST00000393824 LGSNQ5TDP6 509 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 PAOXQ6QHF9 649 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 LRRC8DQ7L1W4 858 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 ANKRD33Q7Z3H0 272 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 ABHD8Q96I13 439 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 ADPGKQ9BRR6 497 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 XAB2Q9HCS7 855 aaKnown RBP11.37□□□□□ -0.59
CUX1-204ENST00000393824 XPO7Q9UIA9 1087 aaKnown RBP11.37□□□□□ -0.59
CUX1-204ENST00000393824 ATP11BQ9Y2G3 1177 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 SQORQ9Y6N5 450 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 CAPN15O75808 1086 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 PRDX6P30041 224 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 MYL6P60660 151 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 PDAP1Q13442 181 aaKnown RBP11.37□□□□□ -0.59
CUX1-204ENST00000393824 ADGRE1Q14246 886 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 GK3PQ14409 553 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 DSC3Q14574 896 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 TAZQ16635 292 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 TCHHL1Q5QJ38 904 aaPredicted RBP11.37□□□□□ -0.59
CUX1-204ENST00000393824 ZFYVE27Q5T4F4 411 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 ZFP1Q6P2D0 407 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 ALKAL1Q6UXT8 129 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 WDR49Q8IV35 697 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 SNX27Q96L92 541 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 PHF12Q96QT6 1004 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 CCT7Q99832 543 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 ADAM2Q99965 735 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 FAM96AQ9H5X1 160 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 FAM105AQ9NUU6 356 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 MIOSQ9NXC5 875 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 SCN5AQ14524 2016 aa11.37□□□□□ -0.59
CUX1-204ENST00000393824 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.36□□□□□ -0.59
CUX1-204ENST00000393824 HTR3EA5X5Y0 456 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 PTGESO14684 152 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 CRHR1P34998 444 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 CLPPQ16740 277 aaPredicted RBP11.36□□□□□ -0.59
CUX1-204ENST00000393824 ELMSAN1Q6PJG2 1045 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 AGMOQ6ZNB7 445 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 BBS12Q6ZW61 710 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 GIPC3Q8TF64 312 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 TFB1MQ8WVM0 346 aaKnown RBP11.36□□□□□ -0.59
CUX1-204ENST00000393824 ITPKCQ96DU7 683 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 LRGUKQ96M69 825 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 FRMD8Q9BZ67 464 aaPredicted RBP11.36□□□□□ -0.59
CUX1-204ENST00000393824 XYLT2Q9H1B5 865 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 CYP4F11Q9HBI6 524 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 TUBA8Q9NY65 449 aaPredicted RBP11.36□□□□□ -0.59
CUX1-204ENST00000393824 STK39Q9UEW8 545 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 RIMS3Q9UJD0 308 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 CNOT11Q9UKZ1 510 aaKnown RBP11.36□□□□□ -0.59
CUX1-204ENST00000393824 CHD9Q3L8U1 2897 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 EYSQ5T1H1 3165 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 CCDC195A0A1B0GUA6 201 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 SELPP16109 830 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 ENTPD1P49961 510 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 ZNF132P52740 706 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 NAA20P61599 178 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 RPL7AP62424 266 aaKnown RBP11.36□□□□□ -0.59
CUX1-204ENST00000393824 PCBP1Q15365 356 aaKnown RBP eCLIP11.36□□□□□ -0.596e-6■■■■■ 34.5
CUX1-204ENST00000393824 DCAF4L1Q3SXM0 396 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 DNAJC24Q6P3W2 148 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 TMEM270Q6UE05 265 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 RNF169Q8NCN4 708 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 DBF4BQ8NFT6 615 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 ACTL9Q8TC94 416 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 COX4I2Q96KJ9 171 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 ZNF778Q96MU6 729 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 HIPK3Q9H422 1215 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 ARHGAP26Q9UNA1 814 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 FADS3Q9Y5Q0 445 aa11.36□□□□□ -0.59
CUX1-204ENST00000393824 CITO14578 2027 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 SMIM28A0A1B0GU29 152 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 C3orf70A6NLC5 250 aaPredicted RBP11.35□□□□□ -0.59
CUX1-204ENST00000393824 GPR182O15218 404 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 KRT38O76015 456 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 ITGB3P05106 788 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 KRT7P08729 469 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 AXLP30530 894 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 HALP42357 657 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 STT3AP46977 705 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 OTUD4Q01804 1114 aaKnown RBP11.35□□□□□ -0.59
CUX1-204ENST00000393824 ZNF252P-AS1Q0IIN9 211 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 TGFBIQ15582 683 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 ZBTB6Q15916 424 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 MAP7D1Q3KQU3 841 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 ISLR2Q6UXK2 745 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 FRMD7Q6ZUT3 714 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 AMIGO2Q86SJ2 522 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 IQCF2Q8IXL9 164 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 TSPAN14Q8NG11 270 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 ZNF606Q8WXB4 792 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 RSAD2Q8WXG1 361 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 KIF12Q96FN5 646 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 RANBP9Q96S59 729 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 GAD1Q99259 594 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 SLC13A1Q9BZW2 595 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 DNAJC28Q9NX36 388 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 IGSF9Q9P2J2 1179 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms