RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 NOGQ13253 232 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 RCN2Q14257 317 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 DUS1LQ6P1R4 473 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 C16orf46Q6P387 395 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 RNF180Q86T96 592 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 UNC5BQ8IZJ1 945 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TLE6Q9H808 572 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CRTAC1Q9NQ79 661 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TRPV5Q9NQA5 729 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CACNG4Q9UBN1 327 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 PAIP2BQ9ULR5 123 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 MYBPHLA2RUH7 354 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 C9IYK1 514 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 H0Y3Z8 333 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ENO1P06733 434 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 PDHA1P08559 390 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ERVK-10P10266 1014 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CD52P31358 61 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 SCNN1GP51170 649 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 RPL10AP62906 217 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CACNB2Q08289 660 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 NIPAL4Q0D2K0 466 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ITGA7Q13683 1181 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 SMAD1Q15797 465 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TBCCQ15814 346 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CTC1Q2NKJ3 1217 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 INTS6LQ5JSJ4 861 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 OTUD1Q5VV17 481 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ZCCHC23Q6ZST2 131 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 PCSK9Q8NBP7 692 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 OR52K1Q8NGK4 314 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 SH3TC2Q8TF17 1288 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 PCED1BQ96HM7 432 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TSNARE1Q96NA8 513 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ANKRD27Q96NW4 1050 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 SMOQ99835 787 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 SIKE1Q9BRV8 207 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TRIM62Q9BVG3 475 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 NMUR2Q9GZQ4 415 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 DCLRE1BQ9H816 532 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 VANGL2Q9ULK5 521 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TMA7Q9Y2S6 64 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 B2RBV5 119 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 AP3B1O00203 1094 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 GSC2O15499 205 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CIB2O75838 187 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 B3GAT3O94766 335 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 MYCP01106 439 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 POMCP01189 267 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ODC1P11926 461 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 GRK2P25098 689 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 PTPN3P26045 913 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 RPL9P32969 192 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CLCNKBP51801 687 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TAF11Q15544 211 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 THOC7Q6I9Y2 204 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CES3Q6UWW8 571 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ALYREFQ86V81 257 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TEX9Q8N6V9 391 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 PTCD3Q96EY7 689 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 GLT1D1Q96MS3 346 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 VAT1Q99536 393 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CADM1Q9BY67 442 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CHST12Q9NRB3 414 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ARMCX1Q9P291 453 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ADAM28Q9UKQ2 775 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 GIT1Q9Y2X7 761 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 PSMD3O43242 534 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 AOC2O75106 756 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 PEX11AO75192 247 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 AP2A1O95782 977 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 CYBAP13498 195 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 PGM1P36871 562 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 SCAPQ12770 1279 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 INSCQ1MX18 579 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 ARNTL2Q8WYA1 636 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 EDEM1Q92611 657 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 KCNK16Q96T55 309 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 COLEC11Q9BWP8 271 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 DENND2DQ9H6A0 471 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 STOML1Q9UBI4 398 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 APOBEC2Q9Y235 224 aaKnown RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 HBS1LQ9Y450 684 aaKnown RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 TRIP12Q14669 1992 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 MAGEB16A2A368 324 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 HMX2A2RU54 273 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 TMEM247A6NEH6 219 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 PLIN3O60664 434 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 USP12O75317 370 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 SERPINE1P05121 402 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 SRGAP2BP0DMP2 458 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 VARSP26640 1264 aaKnown RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 TM4SF4P48230 202 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 SLC1A6P48664 564 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 NPY2RP49146 381 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 SERPINB8P50452 374 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 RABGGTBP53611 331 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 ALDH18A1P54886 795 aaKnown RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 PPIDQ08752 370 aaKnown RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 STRA8Q7Z7C7 330 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms