RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RCE1Q9Y256 329 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 MORC2Q9Y6X9 1032 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 DOCK7Q96N67 2140 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 TRBV5-7A0A0A0MS05 114 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 FAM90A18PA6NE21 464 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 FAM90A16PA6NEW6 464 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 C3orf70A6NLC5 250 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 FAM90A9PA6NNJ1 464 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 FAM90A5PA8MXJ8 464 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 KCNJ18B7U540 433 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 HNRNPDLO14979 420 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 FFAR2O15552 330 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 HEXIM1O94992 359 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 FAM90A15PP0C7V4 464 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 FAM90A14PP0C7W9 464 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 CLCN5P51795 746 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 RBM6P78332 1123 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 CRYZQ08257 329 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 Q0VFX4 171 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 KEAP1Q14145 624 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 PUM3Q15397 648 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 CCDC38Q502W7 563 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 ZNF569Q5MCW4 686 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 FNBP1LQ5T0N5 605 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 ARL6IP4Q66PJ3 421 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 PGBD2Q6P3X8 592 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 TMEM71Q6P5X7 295 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 VPS52Q8N1B4 723 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 KDM1BQ8NB78 822 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 ELP5Q8TE02 316 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 WDR60Q8WVS4 1066 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 HERPUD2Q9BSE4 406 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 DCLK3Q9C098 648 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 OR6C75A6NL08 312 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 CYP21A2P08686 494 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 CHRNB2P17787 502 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 CHRNA5P30532 468 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 ROR2Q01974 943 aaKnown RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 ICA1Q05084 483 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 HNF4GQ14541 408 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 LRRC24Q50LG9 513 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 DCAF12L2Q5VW00 463 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 NADSYN1Q6IA69 706 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 RASGRP2Q7LDG7 609 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 MYCT1Q8N699 235 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 GABPB2Q8TAK5 448 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 CCT6BQ92526 530 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 FAM84BQ96KN1 310 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 SLITRK1Q96PX8 696 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 MEIS3Q99687 375 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 TMEM120AQ9BXJ8 343 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 B3GNT4Q9C0J1 378 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 OBP2BQ9NPH6 170 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PLK2Q9NYY3 685 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 DTX4Q9Y2E6 619 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PKP3Q9Y446 797 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 A0A087WYN8 130 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 hCG_1642624A0A1W2PR95 340 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 STMND1H3BQB6 276 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 LIASO43766 372 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 KLKB1P03952 638 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 FGF3P11487 239 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 ARSBP15848 533 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PRPH2P23942 346 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 TYK2P29597 1187 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PDIA3P30101 505 aaKnown RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PPP3CCP48454 512 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 RCAN1P53805 252 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 RRP1P56182 461 aaKnown RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 GALNT1Q10472 559 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PDCD2Q16342 344 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PFKFB4Q16877 469 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 TMEM88Q6PEY1 159 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PRSS57Q6UWY2 283 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 LIN28BQ6ZN17 250 aaKnown RBP eCLIP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 USP43Q70EL4 1123 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 ZNF367Q7RTV3 350 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 ANKS1BQ7Z6G8 1248 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 NRSN1Q8IZ57 195 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 HORMAD2Q8N7B1 307 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 ATG16L2Q8NAA4 619 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 MYRIPQ8NFW9 859 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 KCNJ9Q92806 393 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PPP1R10Q96QC0 940 aaKnown RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 TP63Q9H3D4 680 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-206ENST00000376646 HIPK3Q9H422 1215 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PLSCR4Q9NRQ2 329 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 HIF1ANQ9NWT6 349 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 MDFICQ9P1T7 246 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 DAPP1Q9UN19 280 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 RAP2CQ9Y3L5 183 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 PCDHGB3Q9Y5G1 929 aa2.42□□□□□ -2.02
VPS13A-206ENST00000376646 A0A0A0MQY5 61 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 CCDC189A1A4V9 331 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 LGALS16A8MUM7 142 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 GRM8O00222 908 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 SPRY3O43610 288 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 SKAP2O75563 359 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-206ENST00000376646 SLC16A2P36021 539 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 THPOP40225 353 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms