RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 ETNK2Q9NVF9 386 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 COL14A1Q05707 1796 aaKnown RBP11.78□□□□□ -0.52
SYNE1-204ENST00000367248 ATP4AP20648 1035 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 CPA2P48052 419 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 PRIM2P49643 509 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 ALFQ53S48 1182 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 TMC3Q7Z5M5 1100 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 ICA1LQ8NDH6 482 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 THTPAQ9BU02 230 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 EIF2AQ9BY44 585 aaKnown RBP11.78□□□□□ -0.52
SYNE1-204ENST00000367248 GTF2A1LQ9UNN4 478 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 A0A096LPK6 155 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 TMEM191CA6NGB0 347 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 PER2O15055 1255 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 CYP3A5P20815 502 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 HNF4AP41235 474 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 MARCKSL1P49006 195 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 LONP2Q86WA8 852 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 UNC93B1Q9H1C4 597 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 RAD54BQ9Y620 910 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 CCT8L1PA6NM43 557 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 SLCO1B7G3V0H7 640 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 LGR5O75473 907 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 OR56A5P0C7T3 313 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 ZSCAN5DPP0CG00 497 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 ABL2P42684 1182 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 GRTP1Q5TC63 336 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 HLA-DQA1Q5Y7H0 255 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 PSTKQ8IV42 348 aaKnown RBP11.78□□□□□ -0.52
SYNE1-204ENST00000367248 JOSD2Q8TAC2 188 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 NSL1Q96IY1 281 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 MAGEB18Q96M61 343 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 PANX3Q96QZ0 392 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 CACNG4Q9UBN1 327 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 SLC45A1Q9Y2W3 748 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 COPAP53621 1224 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 BRMS1LQ5PSV4 323 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 N4BP2L1Q5TBK1 243 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-204ENST00000367248 OR9Q1Q8NGQ5 310 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 PCDHB18PQ96TA0 734 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 TRPC4Q9UBN4 977 aa11.78□□□□□ -0.52
SYNE1-204ENST00000367248 KRT6AP02538 564 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 KRT6BP04259 564 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 CDH2P19022 906 aaPredicted RBP11.77□□□□□ -0.52
SYNE1-204ENST00000367248 KRT6CP48668 564 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 ZCWPW2Q504Y3 356 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 NPNTQ6UXI9 565 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 ADAM28Q9UKQ2 775 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 SEC24DO94855 1032 aaPredicted RBP11.77□□□□□ -0.52
SYNE1-204ENST00000367248 ADH1CP00326 375 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 APODP05090 189 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 EPHX1P07099 455 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 SNRPD1P62314 119 aaKnown RBP11.77□□□□□ -0.52
SYNE1-204ENST00000367248 AASDHQ4L235 1098 aaPredicted RBP11.77□□□□□ -0.52
SYNE1-204ENST00000367248 PCID2Q5JVF3 399 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 SEL1L3Q68CR1 1132 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 SLC22A9Q8IVM8 553 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 ZCCHC9Q8N567 271 aaKnown RBP11.77□□□□□ -0.52
SYNE1-204ENST00000367248 FZD8Q9H461 694 aa11.77□□□□□ -0.52
SYNE1-204ENST00000367248 AKAP10O43572 662 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 TRIM13O60858 407 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 RNASEH2AO75792 299 aaKnown RBP11.77□□□□□ -0.53
SYNE1-204ENST00000367248 CYP1A1P04798 512 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-204ENST00000367248 MPOP05164 745 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 TAF10Q12962 218 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 USP45Q70EL2 814 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 PARP9Q8IXQ6 854 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 FAM162AQ96A26 154 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 FCRL2Q96LA5 508 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-204ENST00000367248 NMRAL1Q9HBL8 299 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 SCHIP1Q9P0W5 487 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-204ENST00000367248 RAB21Q9UL25 225 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.77□□□□□ -0.53
SYNE1-204ENST00000367248 CRYL1Q9Y2S2 319 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 GSAPA4D1B5 854 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 RCCD1A6NED2 376 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 FAM47E-STBD1D6RA91 191 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 FSCN2O14926 492 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 TM9SF1O15321 606 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 LIASO43766 372 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 MMP8P22894 467 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 RPL22P35268 128 aaKnown RBP11.77□□□□□ -0.53
SYNE1-204ENST00000367248 RABGGTBP53611 331 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 NAB1Q13506 487 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 DMC1Q14565 340 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 AADACL2Q6P093 401 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 CATSPER1Q8NEC5 780 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 MCOLN3Q8TDD5 553 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 CEP19Q96LK0 163 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 PTPRJQ12913 1337 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 hCG_1818297A0A087WSY0 165 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 MGAT4DA6NG13 374 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 GNRH1P01148 92 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 CFIP05156 583 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 GOT1P17174 413 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 PSMB4P28070 264 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 FMO4P31512 558 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 JAG1P78504 1218 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 NPAS4Q8IUM7 802 aa11.77□□□□□ -0.53
SYNE1-204ENST00000367248 USP6NLQ92738 828 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms