RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 BNIP2Q12982 314 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 RAD9BQ6WBX8 426 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 FAM136AQ96C01 138 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 TTLL13PA6NNM8 815 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ITGB3P05106 788 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 OR1G1P47890 313 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 FRMPD1Q5SYB0 1578 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 LDHDQ86WU2 507 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 PYDC1Q8WXC3 89 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 CRISPLD1Q9H336 500 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 NT5MQ9NPB1 228 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 XPR1Q9UBH6 696 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 CORO1CQ9ULV4 474 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 FXR2P51116 673 aaKnown RBP eCLIP9.43□□□□□ -0.92e-6■■■□□ 17.6
VPS13A-203ENST00000360280 SMIM5Q71RC9 77 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 PIH1D2Q8WWB5 315 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 TRIM2Q9C040 744 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 NAALADL1Q9UQQ1 740 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ITIH1P19827 911 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ZNF621Q6ZSS3 439 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 DHDDSQ86SQ9 333 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 SYT12Q8IV01 421 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 SLC39A8Q9C0K1 460 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ABCA9Q8IUA7 1624 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 CHST10O43529 356 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 IFNA6P05013 189 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 MNDAP41218 407 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 CCNG2Q16589 344 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 XRRA1Q6P2D8 792 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 TMC3Q7Z5M5 1100 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 FBXW8Q8N3Y1 598 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 UBA3Q8TBC4 463 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 METTL6Q8TCB7 284 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ZNF668Q96K58 619 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 DNAJC1Q96KC8 554 aaKnown RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ACAP1Q15027 740 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 RGSL1A5PLK6 1076 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 TSPAN4O14817 238 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 CYP4F2P78329 520 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 CYP4F3Q08477 520 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 RFX4Q33E94 735 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 PAPD7Q5XG87 772 aaKnown RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 IL27RAQ6UWB1 636 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 NEK7Q8TDX7 302 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 PNPLA7Q6ZV29 1317 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 H2AFXP16104 143 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 FAM131AQ6UXB0 335 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 TRMT2AQ8IZ69 625 aaKnown RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ABI2Q9NYB9 513 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 REM1O75628 298 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 FAM196AQ6ZSG2 479 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 PACS2Q86VP3 889 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 TNFAIP8L1Q8WVP5 186 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 DMGDHQ9UI17 866 aaKnown RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 RIPK2O43353 540 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 LRIG2O94898 1065 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 GH1P01241 217 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 PROCP04070 461 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 BMP7P18075 431 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 XIAPP98170 497 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 RBM44Q6ZP01 1051 aaKnown RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 PRR23BQ6ZRT6 265 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 DPF2Q92785 391 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 AP1S3Q96PC3 154 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 DPP3Q9NY33 737 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 RRN3P2A6NIE6 340 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 DNAJB2P25686 324 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ADSLP30566 484 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 SLC45A4Q5BKX6 768 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 LRRC69Q6ZNQ3 347 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 FAM92BQ6ZTR7 304 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 MILR1Q7Z6M3 343 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 TOR4AQ9NXH8 423 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 RB1P06400 928 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 CLK3P49761 638 aaKnown RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 KLK7P49862 253 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ARPC4P59998 168 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 PHF21BQ96EK2 531 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ERMAPQ96PL5 475 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-203ENST00000360280 VPS35Q96QK1 796 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 CST11Q9H112 138 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 SLAIN2Q9P270 581 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 ARMCX1Q9P291 453 aa9.43□□□□□ -0.9
VPS13A-203ENST00000360280 A0A0G2JPF8 293 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 HNRNPCL3B7ZW38 293 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 PLIN3O60664 434 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 HNRNPCL4P0DMR1 293 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 CLK2P49760 499 aaKnown RBP9.42□□□□□ -0.9
VPS13A-203ENST00000360280 USF2Q15853 346 aaPredicted RBP9.42□□□□□ -0.9
VPS13A-203ENST00000360280 GLRA4Q5JXX5 417 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 DNAJC14Q6Y2X3 702 aaPredicted RBP9.42□□□□□ -0.9
VPS13A-203ENST00000360280 CD302Q8IX05 232 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 SFRP1Q8N474 314 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 PIK3R3Q92569 461 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 ZNF75CPQ92670 426 aaPredicted RBP9.42□□□□□ -0.9
VPS13A-203ENST00000360280 TMEM143Q96AN5 459 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 SLC12A4Q9UP95 1085 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 FUKQ8N0W3 1084 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 UGGT1Q9NYU2 1555 aa9.42□□□□□ -0.9
VPS13A-203ENST00000360280 FOXN3O00409 490 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms