RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NMRAL1Q9HBL8 299 aa22.81■■□□□ 1.24
TRIM28-202ENST00000341753 RNF19AQ9NV58 838 aa22.81■■□□□ 1.24
TRIM28-202ENST00000341753 CEPT1Q9Y6K0 416 aa22.81■■□□□ 1.24
TRIM28-202ENST00000341753 KCNK1O00180 336 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 PIGNO95427 931 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 C2P06681 752 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 MLNP12872 115 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 ART3Q13508 389 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 AMHR2Q16671 573 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 IL23RQ5VWK5 629 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 PDCD6IPQ8WUM4 868 aaKnown RBP22.8■■□□□ 1.24
TRIM28-202ENST00000341753 NDRG1Q92597 394 aaKnown RBP22.8■■□□□ 1.24
TRIM28-202ENST00000341753 CPNE1Q99829 537 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 C2orf40Q9H1Z8 148 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 MATN2O00339 956 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 VTNP04004 478 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 CDH2P19022 906 aaPredicted RBP22.8■■□□□ 1.24
TRIM28-202ENST00000341753 IREB2P48200 963 aaKnown RBP22.8■■□□□ 1.24
TRIM28-202ENST00000341753 NR2C2P49116 596 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 SLC10A6Q3KNW5 377 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 ARL13AQ5H913 290 aaPredicted RBP22.8■■□□□ 1.24
TRIM28-202ENST00000341753 GRTP1Q5TC63 336 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 SEL1L3Q68CR1 1132 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 ZDHHC2Q9UIJ5 367 aa22.8■■□□□ 1.24
TRIM28-202ENST00000341753 ARHGAP10A1A4S6 786 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 C7orf72A4D263 438 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 ARSAP15289 507 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 ME2P23368 584 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 EMP3P54852 163 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 METTL21CQ5VZV1 264 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 NLRP7Q8WX94 980 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 EME1Q96AY2 570 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 HSPBAP1Q96EW2 488 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 APOL2Q9BQE5 337 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 CXCL16Q9H2A7 254 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 NME7Q9Y5B8 376 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 A0A087WZ62 844 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 PRSS51A0A1B0GVH4 220 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 ZFXP17010 805 aaPredicted RBP22.79■■□□□ 1.24
TRIM28-202ENST00000341753 GRIA4P48058 902 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 NUMBP49757 651 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 ZFP1Q6P2D0 407 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 RP9Q8TA86 221 aaKnown RBP22.79■■□□□ 1.24
TRIM28-202ENST00000341753 URGCPQ8TCY9 931 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 MFSD3Q96ES6 412 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 FDXACB1Q9BRP7 624 aaPredicted RBP22.79■■□□□ 1.24
TRIM28-202ENST00000341753 PCDHAC1Q9H158 963 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 ADARB2Q9NS39 739 aaKnown RBP22.79■■□□□ 1.24
TRIM28-202ENST00000341753 ADA2Q9NZK5 511 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 RNF181Q9P0P0 153 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 RNF11Q9Y3C5 154 aa22.79■■□□□ 1.24
TRIM28-202ENST00000341753 KPNA7A9QM74 516 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 TMEM233B4DJY2 109 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 HDAC3O15379 428 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 GRID2O43424 1007 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 ZNF286BP0CG31 522 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 RPL10P27635 214 aaKnown RBP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 SPRP35270 261 aaPredicted RBP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 AVPR1AP37288 418 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 NAGLUP54802 743 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 NR1H2P55055 460 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 TMEM132DQ14C87 1099 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 DUS1LQ6P1R4 473 aaKnown RBP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 ERO1BQ86YB8 467 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 SPNS2Q8IVW8 549 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 ZNF567Q8N184 647 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 PCDH20Q8N6Y1 951 aaKnown RBP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 TMEM102Q8N9M5 508 aaPredicted RBP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 CCT7Q99832 543 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 TASP1Q9H6P5 420 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 C20orf96Q9NUD7 363 aaPredicted RBP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 PLK2Q9NYY3 685 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 TNFSF13BQ9Y275 285 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 DESP17661 470 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 PSMC3P17980 439 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 PPARGP37231 505 aaPredicted RBP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 LIMK2P53671 638 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 PPIDQ08752 370 aaKnown RBP22.78■■□□□ 1.24
TRIM28-202ENST00000341753 INCA1Q0VD86 236 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 PID1Q7Z2X4 250 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 TRIML2Q8N7C3 387 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 CATSPER1Q8NEC5 780 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 SLC39A10Q9ULF5 831 aa22.78■■□□□ 1.24
TRIM28-202ENST00000341753 PPEF2O14830 753 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 PHGDHO43175 533 aaKnown RBP22.77■■□□□ 1.24
TRIM28-202ENST00000341753 INSRRP14616 1297 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 TFEBP19484 476 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 RPL14P50914 215 aaKnown RBP22.77■■□□□ 1.24
TRIM28-202ENST00000341753 TSPAN14Q8NG11 270 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 CAAP1Q9H8G2 361 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 COQ10BQ9H8M1 238 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 TMEM114B3SHH9 223 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 VAPBO95292 243 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 ADORA2BP29275 332 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 DCTN2Q13561 401 aaKnown RBP22.77■■□□□ 1.24
TRIM28-202ENST00000341753 MGAT5BQ3V5L5 792 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 PLPPR4Q7Z2D5 763 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 PGAM4Q8N0Y7 254 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 SPATA6LQ8N4H0 392 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms