RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZBTB16Q05516 673 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 DLG2Q15700 870 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 ASTE1Q2TB18 679 aaPredicted RBP16.21■□□□□ 0.19
CLN3-201ENST00000333496 EFHC2Q5JST6 749 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 ZNF776Q68DI1 518 aaPredicted RBP16.21■□□□□ 0.19
CLN3-201ENST00000333496 TCEAL6Q6IPX3 200 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 ZNF783Q6ZMS7 281 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 CYP2U1Q7Z449 544 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 STK40Q8N2I9 435 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 DCAF4L2Q8NA75 395 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 PIGKQ92643 395 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 TCEAL3Q969E4 200 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 TBC1D31Q96DN5 1066 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 C2orf49Q9BVC5 232 aaPredicted RBP16.21■□□□□ 0.19
CLN3-201ENST00000333496 GPR174Q9BXC1 333 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 RETREG1Q9H6L5 497 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 MRPL47Q9HD33 250 aaKnown RBP16.21■□□□□ 0.19
CLN3-201ENST00000333496 VPS45Q9NRW7 570 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 GPATCH2LQ9NWQ4 482 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 DNAI1Q9UI46 699 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 ATXN2Q99700 1313 aaKnown RBP16.2■□□□□ 0.18
CLN3-201ENST00000333496 NDUFS2O75306 463 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 LRCH4O75427 683 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 DNTTP04053 509 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 OXTRP30559 389 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 ACSL1P33121 698 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 GFPT1Q06210 699 aaPredicted RBP16.2■□□□□ 0.18
CLN3-201ENST00000333496 TBX2Q13207 712 aaPredicted RBP16.2■□□□□ 0.18
CLN3-201ENST00000333496 MAPK8IP2Q13387 824 aaPredicted RBP16.2■□□□□ 0.18
CLN3-201ENST00000333496 CST6Q15828 149 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 CA9Q16790 459 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 CCDC122Q5T0U0 273 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 DAB2IPQ5VWQ8 1189 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 PEAR1Q5VY43 1037 aaPredicted RBP16.2■□□□□ 0.18
CLN3-201ENST00000333496 LYSMD4Q5XG99 296 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 LINGO4Q6UY18 593 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 FAM124AQ86V42 546 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 MMAAQ8IVH4 418 aaKnown RBP16.2■□□□□ 0.18
CLN3-201ENST00000333496 RMDN1Q96DB5 314 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 ARHGEF26Q96DR7 871 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 HSPA12BQ96MM6 686 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 CHP1Q99653 195 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 ACE2Q9BYF1 805 aaPredicted RBP16.2■□□□□ 0.18
CLN3-201ENST00000333496 ABHD10Q9NUJ1 306 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 PCSK1NQ9UHG2 260 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 PILRBQ9UKJ0 227 aa16.2■□□□□ 0.18
CLN3-201ENST00000333496 K7ERQ8 282 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 MID1O15344 667 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 SMAD6O43541 496 aaKnown RBP16.19■□□□□ 0.18
CLN3-201ENST00000333496 CREB3O43889 395 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 MFAP3LO75121 409 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 CYP1A2P05177 515 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 MIPP30301 263 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 ACVRL1P37023 503 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 MAPKAPK2P49137 400 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 GALCP54803 685 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 ARF5P84085 180 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 LMNB2Q03252 620 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 ACCSLQ4AC99 568 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 Q6ZVU0 165 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 SYT12Q8IV01 421 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 ARHGEF2Q92974 986 aaKnown RBP16.19■□□□□ 0.18
CLN3-201ENST00000333496 SPON2Q9BUD6 331 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 SNRNP25Q9BV90 132 aaKnown RBP16.19■□□□□ 0.18
CLN3-201ENST00000333496 TRIM5Q9C035 493 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 NOL6Q9H6R4 1146 aaKnown RBP16.19■□□□□ 0.18
CLN3-201ENST00000333496 SERGEFQ9UGK8 458 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 AP4E1Q9UPM8 1137 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 ACTL7AQ9Y615 435 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 PCDH15Q96QU1 1955 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 PLXNA2O75051 1894 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 CBX4O00257 560 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 RNF8O76064 485 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 CD160O95971 181 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 TCF4P15884 667 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 DESP17661 470 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 EPHB2P29323 1055 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 ELAVL3Q14576 367 aaKnown RBP16.19■□□□□ 0.18
CLN3-201ENST00000333496 SLC18A3Q16572 532 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 ERMARDQ5T6L9 678 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 ATP11CQ8NB49 1132 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 BTBD6Q96KE9 485 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 PABPC3Q9H361 631 aaKnown RBP16.19■□□□□ 0.18
CLN3-201ENST00000333496 ATP13A1Q9HD20 1204 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 SCML1Q9UN30 329 aa16.19■□□□□ 0.18
CLN3-201ENST00000333496 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.18■□□□□ 0.18
CLN3-201ENST00000333496 SSU72P8A0A1W2PR75 194 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 RNASEH1O60930 286 aaKnown RBP16.18■□□□□ 0.18
CLN3-201ENST00000333496 ZNF821O75541 412 aaPredicted RBP16.18■□□□□ 0.18
CLN3-201ENST00000333496 SLC8A1P32418 973 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 METAP1P53582 386 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 RSPO4Q2I0M5 234 aaPredicted RBP16.18■□□□□ 0.18
CLN3-201ENST00000333496 TTC31Q49AM3 519 aaPredicted RBP16.18■□□□□ 0.18
CLN3-201ENST00000333496 USP30Q70CQ3 517 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 AADATQ8N5Z0 425 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 RTL3Q8N8U3 475 aaKnown RBP16.18■□□□□ 0.18
CLN3-201ENST00000333496 C12orf50Q8NA57 414 aaPredicted RBP16.18■□□□□ 0.18
CLN3-201ENST00000333496 CADM4Q8NFZ8 388 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 EPAS1Q99814 870 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 NUP85Q9BW27 656 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms