RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 RRN3Q9NYV6 651 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 VAV3Q9UKW4 847 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 CAB39Q9Y376 341 aaPredicted RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 CCDC85CA6NKD9 419 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 TATDN1Q6P1N9 297 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 PLPPR4Q7Z2D5 763 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 ZNF438Q7Z4V0 828 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 PSTKQ8IV42 348 aaKnown RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 METTL6Q8TCB7 284 aa10.34□□□□□ -0.75
CHD3-201ENST00000330494 AHCYL2Q96HN2 611 aaKnown RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 COPG1Q9Y678 874 aaKnown RBP10.34□□□□□ -0.75
CHD3-201ENST00000330494 CCDC154A6NI56 674 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 DCXO43602 365 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 TLL1O43897 1013 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 EFCAB14O75071 495 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CHADLQ6NUI6 762 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 IL27RAQ6UWB1 636 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 TMC5Q6UXY8 1006 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 BBS7Q8IWZ6 715 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ZNF75CPQ92670 426 aaPredicted RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 FAM120BQ96EK7 910 aaKnown RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 APOPT1Q96IL0 206 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ZNHIT2Q9UHR6 403 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CNTNAP1P78357 1384 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 TGFB1I1O43294 461 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 FKTNO75072 461 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 HSMCR30P0CW71 290 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CALB2P22676 271 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 GRK2P25098 689 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CRYBB1P53674 252 aaPredicted RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 XRCC4Q13426 336 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 RRP1BQ14684 758 aaKnown RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 LRRC8BQ6P9F7 803 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 KIAA1324Q6UXG2 1013 aaKnown RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 FAM124AQ86V42 546 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 DDHD1Q8NEL9 900 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ASZ1Q8WWH4 475 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 BSNDQ8WZ55 320 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 GDF3Q9NR23 364 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 SEPT3Q9UH03 358 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 MCM8Q9UJA3 840 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CDH9Q9ULB4 789 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 NEURL4Q96JN8 1562 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CYP1A2P05177 515 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ZNF143P52747 638 aaPredicted RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 MARSP56192 900 aaKnown RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 ANKS6Q68DC2 871 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 TMEM199Q8N511 208 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ATG16L2Q8NAA4 619 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 SUSD6Q92537 303 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ACSS2Q9NR19 701 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 COL20A1Q9P218 1284 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 PRR23D1E9PI22 279 aaPredicted RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 INPP4BO15327 924 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 PAPSS1O43252 624 aaPredicted RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 ZMPSTE24O75844 475 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CXCL14O95715 111 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 IL1BP01584 269 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 PRR23D2P0DMB1 279 aaPredicted RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 INSCQ1MX18 579 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 PLEKHM3Q6ZWE6 761 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 POLNQ7Z5Q5 900 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ARL15Q9NXU5 204 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 STMN3Q9NZ72 180 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 PSMD12O00232 456 aaPredicted RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 RGS5O15539 181 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CBX6O95503 412 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CCNE2O96020 404 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ADRA1DP25100 572 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 MAPK1P28482 360 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 GRK4P32298 578 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CCDC153Q494R4 210 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 C9orf57Q5W0N0 161 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 KAT6AQ92794 2004 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ASB8Q9H765 288 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 RPS6KB2Q9UBS0 482 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 SOX13Q9UN79 622 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 MRPS23Q9Y3D9 190 aaKnown RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 HACD1B0YJ81 288 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CCL16O15467 120 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 LIASO43766 372 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 TSC22D2O75157 780 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 CST3P01034 146 aaPredicted RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 CCT8P50990 548 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ITGA7Q13683 1181 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ANGPT1Q15389 498 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 KCNA10Q16322 511 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 UNC5AQ6ZN44 842 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 USP45Q70EL2 814 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 MICU2Q8IYU8 434 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ZCCHC9Q8N567 271 aaKnown RBP10.33□□□□□ -0.76
CHD3-201ENST00000330494 JOSD2Q8TAC2 188 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 NACC2Q96BF6 587 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 HSD17B14Q9BPX1 270 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 MRIQ9BWK5 157 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 MIR1-1HGQ9H1L0 117 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 ASAH2Q9NR71 780 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 PACSIN3Q9UKS6 424 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 BLOC1S6Q9UL45 172 aa10.33□□□□□ -0.76
CHD3-201ENST00000330494 M0R3G1 203 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms