RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 DENND1AQ8TEH3 1009 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 DGCR14Q96DF8 476 aaKnown RBP14.98□□□□□ -0.01
TCOF1-201ENST00000323668 EBF4Q9BQW3 602 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 UGT1A7Q9HAW7 530 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 UGT1A10Q9HAW8 530 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 UGT1A8Q9HAW9 530 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 XPR1Q9UBH6 696 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 PAIP2BQ9ULR5 123 aaKnown RBP14.98□□□□□ -0.01
TCOF1-201ENST00000323668 VPS9D1Q9Y2B5 631 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 STYXL1Q9Y6J8 313 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 CPT1AP50416 773 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 CWF19L1Q69YN2 538 aaKnown RBP14.98□□□□□ -0.01
TCOF1-201ENST00000323668 FAM228AQ86W67 206 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 KLRG1Q96E93 195 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 PARK7Q99497 189 aaKnown RBP14.98□□□□□ -0.01
TCOF1-201ENST00000323668 SLC4A5Q9BY07 1137 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 TRIM54Q9BYV2 358 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 ZMYND8Q9ULU4 1186 aaPredicted RBP14.98□□□□□ -0.01
TCOF1-201ENST00000323668 TRIM38O00635 465 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 CLOCKO15516 846 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 PEX1O43933 1283 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 MSX2P35548 267 aaPredicted RBP14.98□□□□□ -0.01
TCOF1-201ENST00000323668 PTPN9P43378 593 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 SERPINB10P48595 397 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 CHRNB3Q05901 458 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 SLC5A9Q2M3M2 681 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 WSCD1Q658N2 575 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 WDR60Q8WVS4 1066 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 MAF1Q9H063 256 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 TMEM216Q9P0N5 145 aa14.98□□□□□ -0.01
TCOF1-201ENST00000323668 A0A087X1B8 175 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 INPP4BO15327 924 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 CSPG5O95196 566 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 METTL18O95568 372 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 ESRRBO95718 433 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 MRPS5P82675 430 aaKnown RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 PRMT9Q6P2P2 845 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 ILDR2Q71H61 639 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 SMARCD1Q96GM5 515 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 THUMPD3Q9BV44 507 aaKnown RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 KIF17Q9P2E2 1029 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 PTPRJQ12913 1337 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 C15orf38-AP3S2A0A0A6YYH1 394 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 CXorf49A8MYA2 514 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 BAIAP3O94812 1187 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 CYP2B6P20813 491 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 TUBP50607 506 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 SLC44A4Q53GD3 710 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 RALGPS1Q5JS13 557 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 GJC2Q5T442 439 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 ARPINQ7Z6K5 226 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 LENG8Q96PV6 779 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 C17orf80Q9BSJ5 609 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 RUBCNLQ9H714 662 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 TRMT6Q9UJA5 497 aaKnown RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 H0Y626 953 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 IRF6O14896 467 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 GRIN3BO60391 1043 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 CLASP2O75122 1294 aaKnown RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 TADA2AO75478 443 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 TRIM16O95361 564 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 FESP07332 822 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 LRPAP1P30533 357 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 RAB10P61026 200 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 GNASQ5JWF2 1037 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 C10orf120Q5SQS8 335 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 MIB1Q86YT6 1006 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 ENDOVQ8N8Q3 282 aaKnown RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 SENP8Q96LD8 212 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 KCTD15Q96SI1 283 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-201ENST00000323668 DNAJC5Q9H3Z4 198 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 FZD8Q9H461 694 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 LATS2Q9NRM7 1088 aa14.97□□□□□ -0.01
TCOF1-201ENST00000323668 A0A087WXM4 84 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 SPDYE5A6NIY4 337 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 MFSD11O43934 449 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 GTF2A2P52657 109 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 CDC16Q13042 620 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 CERCAMQ5T4B2 595 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 RBM44Q6ZP01 1051 aaKnown RBP14.96□□□□□ -0.01
TCOF1-201ENST00000323668 ASRGL1Q7L266 308 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 CLVS1Q8IUQ0 354 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-201ENST00000323668 TSPAN14Q8NG11 270 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 RHOJQ9H4E5 214 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 MID1IP1Q9NPA3 183 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 LZTS1Q9Y250 596 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 EME2A4GXA9 379 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-201ENST00000323668 SNRPB2P08579 225 aaKnown RBP14.96□□□□□ -0.01
TCOF1-201ENST00000323668 VAV1P15498 845 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 ADORA2AP29274 412 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 DCTN2Q13561 401 aaKnown RBP14.96□□□□□ -0.01
TCOF1-201ENST00000323668 KCNJ11Q14654 390 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 ZRANB3Q5FWF4 1079 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 GLB1LQ6UWU2 654 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 NDNQ99608 321 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 RGS18Q9NS28 235 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 DNAJB4Q9UDY4 337 aa14.96□□□□□ -0.01
TCOF1-201ENST00000323668 AFF4Q9UHB7 1163 aaKnown RBP14.96□□□□□ -0.01
TCOF1-201ENST00000323668 CNTNAP2Q9UHC6 1331 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms