RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SSTR1P30872 391 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 EIF2S3P41091 472 aaKnown RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CPT1AP50416 773 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 HTR3CQ8WXA8 447 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 FAM84BQ96KN1 310 aaPredicted RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 TBC1D10AQ9BXI6 508 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 NYAP2Q9P242 653 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 A0A088AWK7 358 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 AP3D1O14617 1153 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 RPS6KA4O75676 772 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CYP11B2P19099 503 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 ZNF10P21506 573 aaPredicted RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 MGAT1P26572 445 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 LSM3P62310 102 aaKnown RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 HLA-DQA1Q5Y7H0 255 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 PHF10Q8WUB8 498 aaKnown RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 ZNF512BQ96KM6 892 aaPredicted RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 YME1L1Q96TA2 773 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 COG5Q9UP83 839 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 OR56A5P0C7T3 313 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 COPZ1P61923 177 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CYP4F2P78329 520 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CYP4F3Q08477 520 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 RXFP2Q8WXD0 754 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CCDC28BQ9BUN5 200 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 RASA1P20936 1047 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 TMEM176AQ96HP8 235 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 QRFPRQ96P65 431 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 PANX3Q96QZ0 392 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 TRIT1Q9H3H1 467 aaKnown RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 RBM22Q9NW64 420 aaKnown RBP eCLIP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 POLD2P49005 469 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 MTAPQ13126 283 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 GRPEL2Q8TAA5 225 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 BHMTQ93088 406 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 TBCBQ99426 244 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 TMEM51Q9NW97 253 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 CCNKO75909 580 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 FAM153BP0C7A2 387 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 CRATP43155 626 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 LHX1P48742 406 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 FAM153CQ494X1 144 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 PAGE2BQ5JRK9 111 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 CELF1Q92879 486 aaKnown RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 APBA2Q99767 749 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 TBL1YQ9BQ87 522 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 OSGEPL1Q9H4B0 414 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 PTPRHQ9HD43 1115 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 TAF6LQ9Y6J9 622 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 IL18R1Q13478 541 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 ZIK1Q3SY52 487 aaPredicted RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 WDR49Q8IV35 697 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 UNKQ9C0B0 810 aaKnown RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 VPS45Q9NRW7 570 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 GGA3Q9NZ52 723 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 TELO2Q9Y4R8 837 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 WFS1O76024 890 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 RTN3O95197 1032 aaPredicted RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 RIPK1Q13546 671 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 DPYSQ14117 519 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 ABCA8O94911 1581 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 SNAP23O00161 211 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 SGTAO43765 313 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 CD44P16070 742 aaKnown RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 ALDH7A1P49419 539 aaKnown RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 ZCCHC23Q6ZST2 131 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 STK40Q8N2I9 435 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 LEF1Q9UJU2 399 aaPredicted RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 TTLL13PA6NNM8 815 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.06□□□□□ -0.16
CSPG4-201ENST00000308508 BTN3A1O00481 513 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 SNX3O60493 162 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 SCGNO76038 276 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 MAGEC3Q8TD91 643 aa14.06□□□□□ -0.16
CSPG4-201ENST00000308508 IQCMA0A1B0GVH7 501 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 TPP1O14773 563 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 VIL1P09327 827 aaKnown RBP14.05□□□□□ -0.16
CSPG4-201ENST00000308508 COX4I1P13073 169 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 PTGES3Q15185 160 aaKnown RBP14.05□□□□□ -0.16
CSPG4-201ENST00000308508 MIB1Q86YT6 1006 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 CISHQ9NSE2 258 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 TRPM1Q7Z4N2 1603 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 H3BNX3 289 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 C6orf222P0C671 652 aaPredicted RBP14.05□□□□□ -0.16
CSPG4-201ENST00000308508 NTSP30990 170 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 PLET1Q6UQ28 207 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 FAM131BQ86XD5 332 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 SLC9A8Q9Y2E8 581 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 SQORQ9Y6N5 450 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 ASTN2O75129 1339 aaPredicted RBP14.05□□□□□ -0.16
CSPG4-201ENST00000308508 KRT36O76013 467 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 GLT6D1Q7Z4J2 308 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 TATDN2Q93075 761 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 COLEC11Q9BWP8 271 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 NFKBIZQ9BYH8 718 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 TRIM38O00635 465 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 SCNN1BP51168 640 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 FAAP100Q0VG06 881 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 HKDC1Q2TB90 917 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms