RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 LAMA3Q16787 3333 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 COPEO14579 308 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 RTN3O95197 1032 aaPredicted RBP6.68□□□□□ -1.34
USP47-201ENST00000305481 HLA-DQB2P05538 268 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 HMBSP08397 361 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 SERPINB9P50453 376 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 ELAVL2Q12926 359 aaKnown RBP6.68□□□□□ -1.34
USP47-201ENST00000305481 TRIP4Q15650 581 aaPredicted RBP6.68□□□□□ -1.34
USP47-201ENST00000305481 GALNTL6Q49A17 601 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 SPANXN3Q5MJ09 141 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 C10orf120Q5SQS8 335 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 SLC8B1Q6J4K2 584 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 CHSY1Q86X52 802 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 RNF168Q8IYW5 571 aaPredicted RBP6.68□□□□□ -1.34
USP47-201ENST00000305481 UMODL1-AS1Q8N2C9 162 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 LRRC43Q8N309 656 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 DNAAF3Q8N9W5 541 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 FBXO22Q8NEZ5 403 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 CERS2Q96G23 380 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 AGAP2Q99490 1192 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 LRRC40Q9H9A6 602 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 GLOD4Q9HC38 313 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 TLR8Q9NR97 1041 aaKnown RBP6.68□□□□□ -1.34
USP47-201ENST00000305481 MARCH2Q9P0N8 246 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 PCDH10Q9P2E7 1040 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 SLC12A4Q9UP95 1085 aa6.68□□□□□ -1.34
USP47-201ENST00000305481 DOCK4Q8N1I0 1966 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 SLC38A8A6NNN8 435 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 H7C4K7 107 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ATP9BO43861 1147 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 USP1O94782 785 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 GSRP00390 522 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 SLC2A3P11169 496 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 CRHR1P34998 444 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ADRA1AP35348 466 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 SERPINB4P48594 390 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 IHHQ14623 411 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ANKRD20A4Q4UJ75 823 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 RNF43Q68DV7 783 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 NADSYN1Q6IA69 706 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 FBXL22Q6P050 247 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 TMCO2Q7Z6W1 182 aaPredicted RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 NDUFAF2Q8N183 169 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 MICALL1Q8N3F8 863 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ZNF784Q8NCA9 323 aaPredicted RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 AZIN2Q96A70 460 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ZNF669Q96BR6 464 aaPredicted RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 HMCESQ96FZ2 354 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 BTN2A3PQ96KV6 586 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 FCRL5Q96RD9 977 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 MECRQ9BV79 373 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 PCMTD2Q9NV79 361 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 TMEM248Q9NWD8 314 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 BFARQ9NZS9 450 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 PPARGC1AQ9UBK2 798 aaKnown RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 IPO11Q9UI26 975 aaKnown RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 CAPN7Q9Y6W3 813 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 MICAL3Q7RTP6 2002 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 FAM237BA0A1B0GVD1 139 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 DRGXA6NNA5 263 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 J3KR12 359 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 UBOX5O94941 541 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 SEC24AO95486 1093 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ITGA2BP08514 1039 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 BGNP21810 368 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 NMBRP28336 390 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 GMPRP36959 345 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 NPY2RP49146 381 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 SMARCB1Q12824 385 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 PDE1CQ14123 709 aaPredicted RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 SEPT7Q16181 437 aaKnown RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 FAM133BQ5BKY9 247 aaKnown RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 TEDDM1Q5T9Z0 273 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 RAP1GAP2Q684P5 730 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ZNF449Q6P9G9 518 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 RASSF3Q86WH2 238 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 EGFL6Q8IUX8 553 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.67□□□□□ -1.34
USP47-201ENST00000305481 DIS3LQ8TF46 1054 aaKnown RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 PPM1EQ8WY54 764 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ATP2A3Q93084 1043 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 MCMBPQ9BTE3 642 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 TTLL2Q9BWV7 592 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ZYG11BQ9C0D3 744 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 RBM22Q9NW64 420 aaKnown RBP eCLIP6.67□□□□□ -1.34
USP47-201ENST00000305481 EMCNQ9ULC0 261 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 NUMBLQ9Y6R0 609 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 SLC12A8A0AV02 714 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 TPP1O14773 563 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 TLR5O60602 858 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 PRKCGP05129 697 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 RHOQP17081 205 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 CNTFP26441 200 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 OR1D2P34982 312 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 ALDH7A1P49419 539 aaKnown RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 KCNQ1P51787 676 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 CDH17Q12864 832 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 OVGP1Q12889 678 aa6.67□□□□□ -1.34
USP47-201ENST00000305481 FRG1Q14331 258 aaKnown RBP6.67□□□□□ -1.34
USP47-201ENST00000305481 PPM1JQ5JR12 505 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms