RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PSMD11O00231 422 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 MSH3P20585 1137 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 GSTM5P46439 218 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 ROR2Q01974 943 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 C10orf120Q5SQS8 335 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 ZCCHC8Q6NZY4 707 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 TRMT13Q9NUP7 481 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PHLPP1O60346 1717 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PLA2G6O60733 806 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 SPIRE1Q08AE8 756 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 EIF2B5Q13144 721 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 SLC45A4Q5BKX6 768 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 RNF43Q68DV7 783 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 DNAJC14Q6Y2X3 702 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 GATAD2AQ86YP4 633 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 B3GALT6Q96L58 329 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PCDHGA3Q9Y5H0 932 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 CNPP09543 421 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 GRK3P35626 688 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 NR2C2P49116 596 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 HARS2P49590 506 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 FRG1Q14331 258 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 LRRC38Q5VT99 294 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 NSMCE2Q96MF7 247 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 MEIS2O14770 477 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 CBX6O95503 412 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 GTF2E2P29084 291 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 HOXA10P31260 410 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 EIF2S3P41091 472 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 RPL10AP62906 217 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 AUHQ13825 339 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 ULK2Q8IYT8 1036 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 MYO1HQ8N1T3 1032 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 DHRSXQ8N5I4 330 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 SERAC1Q96JX3 654 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 CITED4Q96RK1 184 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 WDR12Q9GZL7 423 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 EPB41L4BQ9H329 900 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 ARMCX1Q9P291 453 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 AAR2Q9Y312 384 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 ZNF318Q5VUA4 2279 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 AREL1O15033 823 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 BCAT1P54687 386 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 BACE1P56817 501 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 TGM3Q08188 693 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 TTC27Q6P3X3 843 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PGBD2Q6P3X8 592 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 FAM220AQ7Z4H9 259 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 SAPCD2Q86UD0 394 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 OOSP2Q86WS3 158 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 FAM172AQ8WUF8 416 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PRKAG3Q9UGI9 489 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 DYRK3O43781 588 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PSMD10O75832 226 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PSMG1O95456 288 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 FAM83AQ86UY5 434 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PROX1Q92786 737 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 KLHL32Q96NJ5 620 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 SLC2A3P11169 496 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 IFNGR2P38484 337 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 JAM2P57087 298 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 MRPS22P82650 360 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PTPN11Q06124 597 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 TCEAL5Q5H9L2 206 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 ZNF484Q5JVG2 852 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 IRF2BP2Q7Z5L9 587 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 AMER2Q8N7J2 671 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 OR6J1Q8NGC5 347 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 UBA3Q8TBC4 463 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 TIMMDC1Q9NPL8 285 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 LYVE1Q9Y5Y7 322 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PABPC1P11940 636 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 TKTP29401 623 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 ZDHHC13Q8IUH4 622 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 SH3BP1Q9Y3L3 701 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PCSK1P29120 753 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 SLC26A3P40879 764 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 DNERQ8NFT8 737 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 CKAP2Q8WWK9 683 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 EPB41L1Q9H4G0 881 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 ADPRHL2Q9NX46 363 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 ERI2A8K979 691 aaKnown RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 CPA3P15088 417 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PGAM1P18669 254 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 RAP1GAPP47736 663 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 RPS6KA3P51812 740 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 MYLPFQ96A32 169 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 TMEM51Q9NW97 253 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 DYRK1BQ9Y463 629 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 CCDC162PA2VCL2 907 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 KPNA6O60684 536 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 RHBDL3P58872 404 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 TCAIMQ8N3R3 496 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 SEMA4DQ92854 862 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PLGRKTQ9HBL7 147 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 PCDHGA4Q9Y5G9 962 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 ITGAVP06756 1048 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 TPBGLP0DKB5 382 aa10.01□□□□□ -0.81
COL6A3-201ENST00000295550 VEGFAP15692 232 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-201ENST00000295550 MYL6P60660 151 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms