RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SERPINB8P50452 374 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 RAB27AP51159 221 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 WDR60Q8WVS4 1066 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 VAT1Q99536 393 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 CCDC106Q9BWC9 280 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 OXCT2Q9BYC2 517 aaPredicted RBP20.46■□□□□ 0.87
VPS53-201ENST00000291074 A0A096LPK6 155 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 MOCS2O96007 188 aaPredicted RBP20.45■□□□□ 0.86
VPS53-201ENST00000291074 MPP3Q13368 585 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 TUBB3Q13509 450 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 DBN1Q16643 649 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 WDR75Q8IWA0 830 aaKnown RBP20.45■□□□□ 0.86
VPS53-201ENST00000291074 SOX13Q9UN79 622 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 SEPT4O43236 478 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 SLC10A3P09131 477 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 RALBP11234 206 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 CCND3P30281 292 aaPredicted RBP20.45■□□□□ 0.86
VPS53-201ENST00000291074 ELF1P32519 619 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 GRIK1P39086 918 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 CACNB2Q08289 660 aaPredicted RBP20.45■□□□□ 0.86
VPS53-201ENST00000291074 EIF4EBP2Q13542 120 aaPredicted RBP20.45■□□□□ 0.86
VPS53-201ENST00000291074 INSCQ1MX18 579 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 RPAINQ86UA6 219 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 RBM15BQ8NDT2 890 aaKnown RBP20.45■□□□□ 0.86
VPS53-201ENST00000291074 ISL2Q96A47 359 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 IL22Q9GZX6 179 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 OSBPL2Q9H1P3 480 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 ARHGEF38Q9NXL2 777 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 ADAM28Q9UKQ2 775 aa20.45■□□□□ 0.86
VPS53-201ENST00000291074 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.45■□□□□ 0.86
VPS53-201ENST00000291074 CPA3P15088 417 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 NPY2RP49146 381 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 TSPY1Q01534 308 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 CDK18Q07002 472 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 ACSBG2Q5FVE4 666 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 VWA5B1Q5TIE3 1220 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 SDHAF4Q5VUM1 108 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 BTBD8Q5XKL5 378 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 SCD5Q86SK9 330 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 ATPAF2Q8N5M1 289 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 ENDOVQ8N8Q3 282 aaKnown RBP20.44■□□□□ 0.86
VPS53-201ENST00000291074 CXorf56Q9H5V9 222 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 NMUR1Q9HB89 426 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 ZNF135P52742 658 aaPredicted RBP20.44■□□□□ 0.86
VPS53-201ENST00000291074 CDH17Q12864 832 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 PRPSAP1Q14558 356 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 SPATA2LQ8IUW3 424 aaPredicted RBP20.44■□□□□ 0.86
VPS53-201ENST00000291074 IPMKQ8NFU5 416 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 URGCPQ8TCY9 931 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 VPS39Q96JC1 886 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 SLC39A8Q9C0K1 460 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 ACSS2Q9NR19 701 aa20.44■□□□□ 0.86
VPS53-201ENST00000291074 ZNF189O75820 626 aaPredicted RBP20.43■□□□□ 0.86
VPS53-201ENST00000291074 C2P06681 752 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 SERPINA6P08185 405 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 SAT1P21673 171 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 PGM1P36871 562 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 CAP1Q01518 475 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 PRKCZQ05513 592 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 NAPEPLDQ6IQ20 393 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 SCN4BQ8IWT1 228 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 KIRREL3Q8IZU9 778 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 THEM5Q8N1Q8 247 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 FCRL2Q96LA5 508 aaPredicted RBP20.43■□□□□ 0.86
VPS53-201ENST00000291074 DSEQ9UL01 958 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 MEI4A8MW99 385 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 KRT36O76013 467 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 POU6F1Q14863 301 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 ARTNQ5T4W7 220 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 NAPRTQ6XQN6 538 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 MOCOSQ96EN8 888 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 CLPTM1LQ96KA5 538 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 SUSD3Q96L08 255 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 MPP6Q9NZW5 540 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 CPSF2Q9P2I0 782 aaKnown RBP20.43■□□□□ 0.86
VPS53-201ENST00000291074 TAGLN3Q9UI15 199 aa20.43■□□□□ 0.86
VPS53-201ENST00000291074 RPL26L1Q9UNX3 145 aaKnown RBP20.43■□□□□ 0.86
VPS53-201ENST00000291074 TNFRSF10BO14763 440 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 SESN3P58005 492 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 ABCE1P61221 599 aaKnown RBP20.42■□□□□ 0.86
VPS53-201ENST00000291074 GRM3Q14832 879 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 ZNF280BQ86YH2 543 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 SCML4Q8N228 414 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 RSRC1Q96IZ7 334 aaKnown RBP20.42■□□□□ 0.86
VPS53-201ENST00000291074 ABCC13Q9NSE7 274 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 SLC39A10Q9ULF5 831 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 NOD1Q9Y239 953 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 MAFKO60675 156 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 FCGRTP55899 365 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 COG7P83436 770 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 YWHAHQ04917 246 aaPredicted RBP20.42■□□□□ 0.86
VPS53-201ENST00000291074 SLC39A12Q504Y0 691 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 KDELC2Q7Z4H8 507 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 C14orf80Q86SX3 495 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 CLEC14AQ86T13 490 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 PPP4R1Q8TF05 950 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 FAM161BQ96MY7 647 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 TSGA13Q96PP4 275 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 MCMBPQ9BTE3 642 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 FICDQ9BVA6 458 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms