RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 DCAF4L2Q8NA75 395 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 PRSS33Q8NF86 280 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 TSGA10Q9BZW7 698 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 SLC39A8Q9C0K1 460 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 MAGEH1Q9H213 219 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 LRRC19Q9H756 370 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 CD248Q9HCU0 757 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 K7ERQ8 282 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 NPC1O15118 1278 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 PSTPIP1O43586 416 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 KRT86O43790 486 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 PAPSS2O95340 614 aaPredicted RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 FTCDO95954 541 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 EPHX1P07099 455 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 SRPRAP08240 638 aaKnown RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 VAV1P15498 845 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 YBEYP58557 167 aaPredicted RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 ARF5P84085 180 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 SULT2A1Q06520 285 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 LLGL1Q15334 1064 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 IFI16Q16666 785 aaKnown RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 AFMIDQ63HM1 303 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 MFSD7Q6UXD7 560 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 ZNF662Q6ZS27 426 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 MAP7D3Q8IWC1 876 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 RNF10Q8N5U6 811 aaKnown RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 PQLC3Q8N755 202 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 FAF2Q96CS3 445 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 ZNF670Q9BS34 389 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 C2orf49Q9BVC5 232 aaPredicted RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 SLC6A17Q9H1V8 727 aa13.05□□□□□ -0.32
SS18-202ENST00000269138 DDX56Q9NY93 547 aaKnown RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 RCOR3Q9P2K3 495 aaPredicted RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 PACSIN2Q9UNF0 486 aaPredicted RBP13.05□□□□□ -0.32
SS18-202ENST00000269138 SMAD6O43541 496 aaKnown RBP13.04□□□□□ -0.32
SS18-202ENST00000269138 KDELR3O43731 214 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 CD160O95971 181 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 PAPOLAP51003 745 aaKnown RBP13.04□□□□□ -0.32
SS18-202ENST00000269138 DGKEP52429 567 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 NDST2P52849 883 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 NUBP1P53384 320 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 ST8SIA6P61647 398 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 TCF15Q12870 199 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 SERINC3Q13530 473 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 PARP15Q460N3 678 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 HEATR6Q6AI08 1181 aaKnown RBP13.04□□□□□ -0.32
SS18-202ENST00000269138 TMCO3Q6UWJ1 677 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 ARHGAP36Q6ZRI8 547 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 ZNF354CQ86Y25 554 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 REXO1L1PQ8IX06 675 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 KATNAL2Q8IYT4 538 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 TSTD1Q8NFU3 115 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 RNF157Q96PX1 679 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 PRSS16Q9NQE7 514 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 RAPGEFL1Q9UHV5 662 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 SLC25A13Q9UJS0 675 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 FBXO4Q9UKT5 387 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 AMFRQ9UKV5 643 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 PYCARDQ9ULZ3 195 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 PCDHA3Q9Y5H8 950 aa13.04□□□□□ -0.32
SS18-202ENST00000269138 TCRBV21S2A2A0A5A6 115 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 H0Y858 1186 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 J3KR12 359 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 DFFAO00273 331 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 ATP9BO43861 1147 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 SP9P0CG40 484 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 SRCP12931 536 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 CTNNA2P26232 953 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 CTNNA1P35221 906 aaKnown RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 ETFBP38117 255 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 FNTBP49356 437 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 PEX5P50542 639 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 E2F5Q15329 346 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 DLG2Q15700 870 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 HNRNPA1L2Q32P51 320 aaKnown RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 ACCSLQ4AC99 568 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 NCBP2-AS2Q69YL0 99 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 ANO7Q6IWH7 933 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 PEX26Q7Z412 305 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 SH2D3CQ8N5H7 860 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 ATP11CQ8NB49 1132 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 KDM1BQ8NB78 822 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 FRS2Q8WU20 508 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 HMGB4Q8WW32 186 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 ALG3Q92685 438 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 DONSONQ9NYP3 566 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 HS3ST2Q9Y278 367 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 MUC22E2RYF6 1773 aaPredicted RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 ARHGAP42A6NI28 874 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 MFSD11O43934 449 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 SYNCRIPO60506 623 aaKnown RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 SIN3BO75182 1162 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 ZRANB2O95218 330 aaKnown RBP eCLIP13.03□□□□□ -0.32
SS18-202ENST00000269138 MAP3K6O95382 1288 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 APBB3O95704 486 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 KRT10P13645 584 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 GABRG2P18507 467 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 CDKN2BP42772 138 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 VASPP50552 380 aaPredicted RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 SLC10A2Q12908 348 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms