RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 TCEA1P23193 301 aaKnown RBP13.37□□□□□ -0.27
NUP54-201ENST00000264883 CNTFP26441 200 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 ARRB2P32121 409 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 BACE1P56817 501 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 ABCE1P61221 599 aaKnown RBP13.37□□□□□ -0.27
NUP54-201ENST00000264883 DGKZQ13574 1117 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 RAB39AQ14964 217 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 PCLAFQ15004 111 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 SLC9B1Q4ZJI4 515 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 GALNT18Q6P9A2 607 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 EPGNQ6UW88 154 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 ZPBP2Q6X784 338 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 IGFN1Q86VF2 1251 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 C10orf107Q8IVU9 208 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 PGAM4Q8N0Y7 254 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 CPXCR1Q8N123 301 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 FAF2Q96CS3 445 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 CLIP3Q96DZ5 547 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 CDH19Q9H159 772 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 SIAEQ9HAT2 523 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 POPDC2Q9HBU9 364 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 JPH1Q9HDC5 661 aaPredicted RBP13.37□□□□□ -0.27
NUP54-201ENST00000264883 KLHL3Q9UH77 587 aa13.37□□□□□ -0.27
NUP54-201ENST00000264883 RLFQ13129 1914 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 C1orf232A0A0U1RR37 186 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 NOL3O60936 208 aaKnown RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 RFC1P35251 1148 aaPredicted RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 MAGEA6P43360 314 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 CNTN2Q02246 1040 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 GALNT2Q10471 571 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 OXA1LQ15070 435 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 SF3B4Q15427 424 aaKnown RBP eCLIP13.36□□□□□ -0.272e-6■■□□□ 13.6
NUP54-201ENST00000264883 FRA10AC1Q70Z53 315 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 ZNF354CQ86Y25 554 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 WDTC1Q8N5D0 677 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 ZNF280CQ8ND82 737 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 TNIP2Q8NFZ5 429 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 OR5B17Q8NGF7 314 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 SPATA18Q8TC71 538 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 RCN3Q96D15 328 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 RTP4Q96DX8 246 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 OTUD5Q96G74 571 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 FAM84AQ96KN4 292 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 PSD2Q9BQI7 771 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 C1orf50Q9BV19 199 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 NAA50Q9GZZ1 169 aaKnown RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 WDR41Q9HAD4 459 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 SEPT3Q9UH03 358 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 TRIM64BA6NI03 449 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 STX16-NPEPL1H3BU86 382 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 GPR25O00155 361 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 PLIN3O60664 434 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 GLRA3O75311 464 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 ZNF182P17025 639 aaPredicted RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 TCN1P20061 433 aaPredicted RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 OSBPP22059 807 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 HARS2P49590 506 aaKnown RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 SLC10A2Q12908 348 aaPredicted RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 NME3Q13232 169 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 SCARA3Q6AZY7 606 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 DARS2Q6PI48 645 aaKnown RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 ABHD15Q6UXT9 468 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 TIFABQ6ZNK6 161 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 TTC30AQ86WT1 665 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 CADM3Q8N126 398 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 SLC4A11Q8NBS3 891 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 RP9Q8TA86 221 aaKnown RBP13.36□□□□□ -0.27
NUP54-201ENST00000264883 ACDQ96AP0 544 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 C12orf42Q96LP6 360 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 HAPLN2Q9GZV7 340 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 PLAC1Q9HBJ0 212 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 ASNSD1Q9NWL6 643 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 CPQQ9Y646 472 aa13.36□□□□□ -0.27
NUP54-201ENST00000264883 USP2O75604 605 aaPredicted RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 NR3C2P08235 984 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 RALBP11234 206 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 IL1R2P27930 398 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 TCF7P36402 384 aaPredicted RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 ARL2P36404 184 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 DPP6P42658 865 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 IGBP1P78318 339 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 NFATC3Q12968 1075 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 SMTNL2Q2TAL5 461 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 LSM12Q3MHD2 195 aaKnown RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 MTX3Q5HYI7 312 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 NHSL2Q5HYW2 709 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 DLK2Q6UY11 383 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 VASH1Q7L8A9 365 aaPredicted RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 MCUQ8NE86 351 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 CIB1Q99828 191 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 OSBPL10Q9BXB5 764 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 MROQ9BYG7 248 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 AS3MTQ9HBK9 375 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 DKK3Q9UBP4 350 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 IPO11Q9UI26 975 aaKnown RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 SNX13Q9Y5W8 968 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 CDY2AQ9Y6F7 541 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 CDY1Q9Y6F8 540 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 OTOFQ9HC10 1997 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 DYNC1LI2O43237 492 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms