RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TPSB2P20231 275 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 GP5P40197 560 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 PDAP1Q13442 181 aaKnown RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 TPSAB1Q15661 275 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 CCDC6Q16204 474 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 TRIM71Q2Q1W2 868 aaKnown RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 TOP1MTQ969P6 601 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 ALG13Q9NP73 1137 aaKnown RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 FGFR3P22607 806 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 LSP1P33241 339 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 SERPINH1P50454 418 aaKnown RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 ZNF252P-AS1Q0IIN9 211 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 BIRC2Q13490 618 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 FRA10AC1Q70Z53 315 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 IQCKQ8N0W5 287 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 ARNTL2Q8WYA1 636 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 MAML1Q92585 1016 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 KLHL5Q96PQ7 755 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 EBNA1BP2Q99848 306 aaKnown RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 PRMT1Q99873 361 aaKnown RBP11.81□□□□□ -0.52
VPS4A-201ENST00000254950 BBS2Q9BXC9 721 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 NEUROG2Q9H2A3 272 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 TBC1D14Q9P2M4 693 aa11.81□□□□□ -0.52
VPS4A-201ENST00000254950 CCDC195A0A1B0GUA6 201 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 ZNF487B1APH4 448 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 TCP11X1B4DZS4 312 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 C1RP00736 705 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 ATP5BP06576 529 aaKnown RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 TFE3P19532 575 aaPredicted RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 HOXC8P31273 242 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 NDST2P52849 883 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 CDH4P55283 916 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 WDR5P61964 334 aaKnown RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 PITX1P78337 314 aaPredicted RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MPPE1Q53F39 396 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 AARS2Q5JTZ9 985 aaKnown RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 RNASEH2BQ5TBB1 312 aaKnown RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 SDE2Q6IQ49 451 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 CES3Q6UWW8 571 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 RTN4RL1Q86UN2 441 aaPredicted RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MYLK4Q86YV6 388 aaPredicted RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 KLHL23Q8NBE8 558 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MDM1Q8TC05 714 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MCUR1Q96AQ8 359 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 GRAMD1AQ96CP6 724 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 GRHL1Q9NZI5 618 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 VGLL3A8MV65 326 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 CFAP99D6REC4 459 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 SNX2O60749 519 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MAXP61244 160 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 DEFB103AP81534 67 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 BCL2L1Q07817 233 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 TSTA3Q13630 321 aaPredicted RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 E2F5Q15329 346 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 HSP90AA5PQ58FG0 334 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 PCID2Q5JVF3 399 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 NCBP2-AS2Q69YL0 99 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 PDPK2PQ6A1A2 396 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 SLC9A4Q6AI14 798 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 LVRNQ6Q4G3 990 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 METTL3Q86U44 580 aaKnown RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 KCNMB4Q86W47 210 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 ARHGAP24Q8N264 748 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MAGEH1Q9H213 219 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 TLR9Q9NR96 1032 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 VPS45Q9NRW7 570 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 CRLS1Q9UJA2 301 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MLNP12872 115 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 POLR2EP19388 210 aaKnown RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 MAPK8P45983 427 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 CDK7P50613 346 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 WNT3AP56704 352 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 OASLQ15646 514 aaKnown RBP11.8□□□□□ -0.52
VPS4A-201ENST00000254950 KBTBD12Q3ZCT8 623 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 POF1BQ8WVV4 589 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 ZNF333Q96JL9 665 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 FAM96AQ9H5X1 160 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 TASP1Q9H6P5 420 aa11.8□□□□□ -0.52
VPS4A-201ENST00000254950 VAPBO95292 243 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 IGFBP4P22692 258 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 AKT1P31749 480 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 SERPINB8P50452 374 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 IRAK1P51617 712 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 CRADDP78560 199 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 GNA12Q03113 381 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 NSUN2Q08J23 767 aaKnown RBP eCLIP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 CCDC15Q0P6D6 951 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 LBRQ14739 615 aaKnown RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 ARMC12Q5T9G4 340 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 PTRHD1Q6GMV3 140 aaKnown RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 TMCO2Q7Z6W1 182 aaPredicted RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 ZNF567Q8N184 647 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 GSTCDQ8NEC7 633 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 THOC1Q96FV9 657 aaKnown RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 HERC2P3Q9BVR0 1158 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 APOL5Q9BWW9 433 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 EPN3Q9H201 632 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 SHBGP04278 402 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 GDF10P55107 478 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms